BiosimulantBiosimulant
⌘K
Open Web Studio(opens in a new tab)

Koo2013 Shear-to-NO Composed Pathway

About lab

One published Lab

Build with this Lab. Run it anywhere.

Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.

Preparing exact examples…

End-to-end shear-stress driven mechanotransduction. Composes the calcium-influx submodel with the NO-production submodel by wiring the cytosolic calcium output of the first into the cytosolic calcium input of the second. Single experimental knob: stimulus_intensity.

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "stimulus_intensity",
        "maps_to": "calcium_influx.stimulus_intensity"
      },
      {
        "name": "integration_step",
        "maps_to": "calcium_influx.integration_step"
      }
    ],
    "outputs": [
      {
        "name": "cytosolic_calcium",
        "maps_to": "calcium_influx.cytosolic_calcium"
      },
      {
        "name": "ip3",
        "maps_to": "calcium_influx.ip3"
      },
      {
        "name": "active_eNOS",
        "maps_to": "no_production.active_eNOS"
      },
      {
        "name": "nitric_oxide",
        "maps_to": "no_production.nitric_oxide"
      },
      {
        "name": "calcium_influx_state",
        "maps_to": "calcium_influx.state"
      },
      {
        "name": "no_production_state",
        "maps_to": "no_production.state"
      }
    ]
  },
  "title": "Koo2013 Shear-to-NO Composed Pathway",
  "models": [
    {
      "path": "models/calcium-influx",
      "alias": "calcium_influx"
    },
    {
      "path": "models/no-production",
      "alias": "no_production"
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "no_production.cytosolic_calcium",
        "visualisation.calcium_influx_cytosolic_calcium"
      ],
      "from": "calcium_influx.cytosolic_calcium"
    },
    {
      "to": [
        "visualisation.calcium_influx_ip3"
      ],
      "from": "calcium_influx.ip3"
    },
    {
      "to": [
        "visualisation.no_production_active_eNOS"
      ],
      "from": "no_production.active_eNOS"
    },
    {
      "to": [
        "visualisation.no_production_nitric_oxide"
      ],
      "from": "no_production.nitric_oxide"
    },
    {
      "to": [
        "visualisation.calcium_influx_state"
      ],
      "from": "calcium_influx.state"
    },
    {
      "to": [
        "visualisation.calcium_influx_summary"
      ],
      "from": "calcium_influx.summary"
    },
    {
      "to": [
        "visualisation.no_production_state"
      ],
      "from": "no_production.state"
    },
    {
      "to": [
        "visualisation.no_production_summary"
      ],
      "from": "no_production.summary"
    }
  ],
  "package": "koo2013-shear-to-no",
  "runtime": {
    "duration": 600,
    "initial_inputs": {},
    "communication_step": 10
  },
  "version": "1.0.0",
  "description": "End-to-end shear-stress driven mechanotransduction. Composes the calcium-influx submodel with the NO-production submodel by wiring the cytosolic calcium output of the first into the cytosolic calcium input of the second. Single experimental knob: stimulus_intensity.",
  "schema_version": "2.0"
}

Runtime

Duration600
Comms Step10

Runs

Total3
Completed2
Failed1

Metadata

Packagekoo2013-shear-to-no
Created2026-05-04
Updated2026-06-13
biomechanicsendothelialshear-stressmechanotransductioncalciumsbmlbiomodels_ebifaithfulnitric-oxidevisualisationkoo2013other