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Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords This model is described in the article: Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. It can be used to explore systemsbiology verma2016 ca 2 signal propagation dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_total_intracellular_store_ca2_content_ca_t_9",
"label": "Initial Total Intracellular Store CA2 Content Ca T 9",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_9",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_9`."
},
{
"name": "initial_total_intracellular_store_ca2_content_ca_t_8",
"label": "Initial Total Intracellular Store CA2 Content Ca T 8",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_8",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_8`."
},
{
"name": "initial_total_intracellular_store_ca2_content_ca_t_7",
"label": "Initial Total Intracellular Store CA2 Content Ca T 7",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_7",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_7`."
},
{
"name": "initial_total_intracellular_store_ca2_content_ca_t_6",
"label": "Initial Total Intracellular Store CA2 Content Ca T 6",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_6",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_6`."
},
{
"name": "initial_total_intracellular_store_ca2_content_ca_t_5",
"label": "Initial Total Intracellular Store CA2 Content Ca T 5",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_5",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_5`."
},
{
"name": "initial_total_intracellular_store_ca2_content_ca_t_4",
"label": "Initial Total Intracellular Store CA2 Content Ca T 4",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_4",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_4`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.species_labels"
},
{
"name": "total_intracellular_store_ca2_content_ca_t_9",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_9"
},
{
"name": "total_intracellular_store_ca2_content_ca_t_8",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_8"
},
{
"name": "total_intracellular_store_ca2_content_ca_t_7",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_7"
},
{
"name": "total_intracellular_store_ca2_content_ca_t_6",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_6"
},
{
"name": "total_intracellular_store_ca2_content_ca_t_5",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_5"
},
{
"name": "total_intracellular_store_ca2_content_ca_t_4",
"maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_4"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Verma2016 Ca Signal Propagation Along Hepatocyte Cords Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model_state"
],
"from": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model_summary"
],
"from": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model_species_labels"
],
"from": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.species_labels"
}
],
"package": "verma2016-ca-signal-propagation-along-hepatocyte-cords",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords This model is described in the article: Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. It can be used to explore systemsbiology verma2016 ca 2 signal propagation dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageverma2016-ca-signal-propagation-along-hepatocyte-cords
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother