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Single-model lab wrapper for Tang2020 - Estimation of transmission risk of COVID-19 and impact of public health interventions - update. The basic reproduction number of an infectious agent is the average number of infections one case can generate over the course of the infectious period, in a na\u00efve, uninfected population. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_probability",
"label": "Transmission Probability",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.transmission_probability"
},
{
"name": "exposed_progression_rate",
"label": "Exposed Progression Rate",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.exposed_progression_rate"
},
{
"name": "daily_contact_rate",
"label": "Daily Contact Rate",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.daily_contact_rate"
},
{
"name": "quarantine_probability",
"label": "Quarantine Probability",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.quarantine_probability"
},
{
"name": "hospitalization_rate",
"label": "Hospitalization Rate",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.hospitalization_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.species_labels"
},
{
"name": "exposed_quarantined",
"label": "Exposed quarantined",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.exposed_quarantined"
},
{
"name": "susceptible_quarantined",
"label": "Susceptible quarantined",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.susceptible_quarantined"
},
{
"name": "exposed",
"label": "Exposed",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.exposed"
},
{
"name": "infected",
"label": "Infected",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.infected"
},
{
"name": "hospitalised",
"label": "Hospitalised",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.hospitalised"
},
{
"name": "susceptible",
"label": "Susceptible",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.susceptible"
},
{
"name": "recovered",
"label": "Recovered",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.recovered"
},
{
"name": "asymptomatic",
"label": "Asymptomatic",
"maps_to": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.asymptomatic"
}
]
},
"title": "Tang2020 COVID-19 Intervention Risk Update Model Lab",
"models": [
{
"path": "models/core",
"alias": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model",
"parameters": {
"model_path": "data/BIOMD0000000972.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model_state"
],
"from": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model_summary"
],
"from": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model_species_labels"
],
"from": "epidemiology_sbml_tang2020_estimation_of_transmission_risk_of_covi_biomd0000000972_model.species_labels"
}
],
"package": "tang2020-covid-intervention-risk-update",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Tang2020 - Estimation of transmission risk of COVID-19 and impact of public health interventions - update. The basic reproduction number of an infectious agent is the average number of infections one case can generate over the course of the infectious period, in a na\\u00efve, uninfected population. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetang2020-covid-intervention-risk-update
Created2026-05-15
Updated2026-06-13
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisationother