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This ordinary differential equation model of the cellular kinetics and pharmacodynamics of CAR-T cell therapy is described in the publication:Chaudhury, A., Zhu, X., Chu, L., Goliaei, A., June, C., Ke. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_car_t_cells",
"label": "CAR-T Cells",
"units": "native SBML value",
"default": 10,
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.initial_car_t_cells",
"description": "Initial CAR-T Cells. Sets the initial value of bundled SBML symbol `CAR_T_cells`."
},
{
"name": "initial_tumor_burden",
"label": "Tumor Burden",
"units": "native SBML value",
"default": 900.000000000001,
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.initial_tumor_burden",
"description": "Initial Tumor Burden. Sets the initial value of bundled SBML symbol `U`."
}
],
"outputs": [
{
"name": "car_t_cells",
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.car_t_cells",
"description": "CAR-T Cells observable. Maps to SBML symbol `CAR_T_cells`."
},
{
"name": "tumor_burden",
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.tumor_burden",
"description": "Tumor Burden observable. Maps to SBML symbol `U`."
},
{
"name": "state",
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"car-t",
"curated",
"drug-response",
"faithful",
"immunology",
"immunotherapy",
"oncology",
"pharmacology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Chaudhury2020 - First order expansion model of CAR-T cell and tumour kinetics Lab",
"models": [
{
"path": "models/core",
"alias": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model_state"
],
"from": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.state"
},
{
"to": [
"visualisation.oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model_summary"
],
"from": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model_species_labels"
],
"from": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.species_labels"
}
],
"package": "chaudhury2020-first-order-expansion-of-car-t-cell-and-t-4f30f63c",
"runtime": {
"duration": 8.5,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "This ordinary differential equation model of the cellular kinetics and pharmacodynamics of CAR-T cell therapy is described in the publication:Chaudhury, A., Zhu, X., Chu, L., Goliaei, A., June, C., Ke. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration8.5
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagechaudhury2020-first-order-expansion-of-car-t-cell-and-t-4f30f63c
Created2026-05-16
Updated2026-06-13
biomodels_ebicar-tcurateddrug-responsefaithfulimmunologyimmunotherapyoncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvisualisationother