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Source-faithful physiology lab for Komarova2005_PTHaction_OsteoclastOsteoblastCoupling. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_bone_mass",
"label": "Initial Bone Mass",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.initial_bone_mass",
"description": "Initial value for Bone Mass. Maps to source symbol `z`. Units: native SBML value. Naming evidence: source metadata names `z` as `BoneMass`."
},
{
"name": "initial_osteoblasts",
"label": "Initial Osteoblasts",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.initial_osteoblasts",
"description": "Initial value for Osteoblasts. Maps to source symbol `x2`. Units: native SBML value. Naming evidence: source metadata names `x2` as `Osteoblasts`."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.species_labels"
},
{
"name": "bone_mass",
"label": "Bone Mass",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.bone_mass",
"description": "Bone Mass. Maps to source symbol `z`. Units: native SBML value. Naming evidence: source metadata names `z` as `BoneMass`."
},
{
"name": "osteoblasts",
"label": "Osteoblasts",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.osteoblasts",
"description": "Osteoblasts. Maps to source symbol `x2`. Units: native SBML value. Naming evidence: source metadata names `x2` as `Osteoblasts`."
},
{
"name": "osteoclasts",
"label": "Osteoclasts",
"maps_to": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.osteoclasts",
"description": "Osteoclasts. Maps to source symbol `x1`. Units: native SBML value. Naming evidence: source metadata names `x1` as `Osteoclasts`."
}
]
},
"title": "Komarova2005 - Pthaction Osteoclastosteoblastcoupl Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model",
"parameters": {
"model_path": "data/BIOMD0000000279.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model_state"
],
"from": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.state"
},
{
"to": [
"visualisation.physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model_summary"
],
"from": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model_trajectory"
],
"from": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model_species_labels"
],
"from": "physiology_sbml_komarova2005_pthaction_osteoclastosteoblastcoupl_biomd0000000279_model.species_labels"
}
],
"package": "komarova2005-pthaction-osteoclastosteoblastcoupl",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Komarova2005_PTHaction_OsteoclastOsteoblastCoupling. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekomarova2005-pthaction-osteoclastosteoblastcoupl
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother