Wodarz2007 - Sierro Klenerman Mathematical Dynamics Killer T Cell Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_free_virus_particles",
        "label": "Initial Free Virus Particles",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.initial_free_virus_particles",
        "description": "Initial value for Free Virus Particles. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source metadata names `v` as `free virus particles`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_latently_infected_cells",
        "label": "Initial Latently Infected Cells",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.initial_latently_infected_cells",
        "description": "Initial value for Latently Infected Cells. Maps to source symbol `L`. Units: dimensionless. Naming evidence: source metadata names `L` as `latently infected cells`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.variable_labels"
      },
      {
        "name": "free_virus_particles",
        "label": "Free Virus Particles",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.free_virus_particles",
        "description": "Free Virus Particles. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source metadata names `v` as `free virus particles`."
      },
      {
        "name": "latently_infected_cells",
        "label": "Latently Infected Cells",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.latently_infected_cells",
        "description": "Latently Infected Cells. Maps to source symbol `L`. Units: dimensionless. Naming evidence: source metadata names `L` as `latently infected cells`."
      },
      {
        "name": "susceptible_host_cells",
        "label": "Susceptible Host Cells",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.susceptible_host_cells",
        "description": "Susceptible Host Cells. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `susceptible host cells`."
      },
      {
        "name": "infected_cells_expressing_early_viral_gene_products",
        "label": "Infected Cells Expressing Early Viral Gene Products",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.infected_cells_expressing_early_viral_gene_products",
        "description": "Infected Cells Expressing Early Viral Gene Products. Maps to source symbol `y0`. Units: dimensionless. Naming evidence: source metadata names `y0` as `infected cells expressing early-viral gene products`."
      },
      {
        "name": "infected_cells_expressing_late_viral_gene_products",
        "label": "Infected Cells Expressing Late Viral Gene Products",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.infected_cells_expressing_late_viral_gene_products",
        "description": "Infected Cells Expressing Late Viral Gene Products. Maps to source symbol `y1`. Units: dimensionless. Naming evidence: source metadata names `y1` as `infected cells expressing late-viral gene products`."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Wodarz2007 - Sierro Klenerman Mathematical Dynamics Killer T Cell Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model",
      "parameters": {
        "model_path": "data/wodarz_sierro_klenerman_2007_a.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model_state"
      ],
      "from": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model_summary"
      ],
      "from": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model_trajectory"
      ],
      "from": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model_variable_labels"
      ],
      "from": "physiology_cellml_wodarz_sierro_klenerman_2007_wodarzsierroklenerman2007_model.variable_labels"
    }
  ],
  "package": "wodarz2007-sierro-klenerman-mathematical-dynamics-killer-t-cell",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.1",
  "description": "Source-faithful physiology lab for Wodarz, Sierro, Klenerman, 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}