Hynne2001_Glycolysis Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_extracellular_glucose",
        "units": "native SBML value",
        "default": 6.7,
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.initial_extracellular_glucose",
        "description": "Initial condition for extracellular glucose. Maps to bundled SBML symbol `GlcX`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_cytosolic_glucose",
        "units": "native SBML value",
        "default": 0.573074,
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.initial_cytosolic_glucose",
        "description": "Initial condition for cytosolic glucose. Maps to bundled SBML symbol `Glc`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 2.1,
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 4.2,
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_adp",
        "units": "native SBML value",
        "default": 1.5,
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.initial_adp",
        "description": "Initial condition for adp. Maps to bundled SBML symbol `ADP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "extracellular_glucose",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.extracellular_glucose"
      },
      {
        "name": "cytosolic_glucose",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.cytosolic_glucose"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.atp"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.glucose_6_phosphate"
      },
      {
        "name": "adp",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.adp"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.observable_labels"
      }
    ]
  },
  "title": "Hynne2001_Glycolysis Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model",
      "parameters": {
        "model_path": "data/BIOMD0000000061.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model_observable_values"
      ],
      "from": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model_run_summary"
      ],
      "from": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model_observable_labels"
      ],
      "from": "metabolism_sbml_hynne2001_glycolysis_biomd0000000061_model.observable_labels"
    }
  ],
  "package": "hynne2001-glycolysis",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "The model reproduces Fig 6 of the paper. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}