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Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_map_kinase",
"label": "Initial MAP kinase",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.initial_map_kinase",
"description": "Initial level of MAP kinase. Maps to SBML symbol `species_1`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "mapk_kinase_pp",
"label": "MAPK kinase PP",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.mapk_kinase_pp",
"description": "MAPK kinase PP. Maps to SBML symbol `species_2` and is emitted in native SBML units."
},
{
"name": "map_kinase_mapk_kinase_pp",
"label": "MAP kinase MAPK kinase PP",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.map_kinase_mapk_kinase_pp",
"description": "MAP kinase MAPK kinase PP. Maps to SBML symbol `species_3` and is emitted in native SBML units."
},
{
"name": "source_defined_mk_p_state",
"label": "source-defined MK-P state",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.source_defined_mk_p_state",
"description": "source-defined MK-P state. Maps to SBML symbol `species_4` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk"
],
"title": "Sarma2012 - Interaction topologies of MAPK cascade (M2_K2_USEQ_short_duration_signal) Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model_state"
],
"from": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model_summary"
],
"from": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model_species_labels"
],
"from": "signaling_sbml_sarma2012_interaction_topologies_of_mapk_cascade_model1204280026_model.species_labels"
}
],
"package": "sarma2012-interaction-topologies-of-mapk-cascade-model1204280026",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesarma2012-interaction-topologies-of-mapk-cascade-model1204280026
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisationother