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Source-faithful physiology lab for Ni et al. 2017 Human atrial model. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mV"
]
},
{
"name": "initial_ca_sri",
"label": "Initial Ca Sri",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.initial_ca_sri",
"description": "Initial value for Ca Sri. Maps to source symbol `Ca_SRi`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_sri",
"label": "Ca Sri",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.ca_sri",
"description": "Ca Sri. Maps to source symbol `Ca_SRi`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_srss",
"label": "Ca Srss",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.ca_srss",
"description": "Ca Srss. Maps to source symbol `Ca_SRss`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_ss",
"label": "Ca Ss",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.ca_ss",
"description": "Ca Ss. Maps to source symbol `Ca_ss`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Ni2017 - Human Atrial Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model",
"parameters": {
"model_path": "data/ni_2017.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_state"
],
"from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.state"
},
{
"to": [
"visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_summary"
],
"from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_trajectory"
],
"from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_variable_labels"
],
"from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.variable_labels"
}
],
"package": "ni2017-human-atrial",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Ni et al. 2017 Human atrial model. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageni2017-human-atrial
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother