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This is model in continous darkness (DD) described in the article Toward a detailed computational model for the mammalian circadian clock This model features the full interlocked negative and positive. It can be used to explore systemsbiology leloup2003 circclock dd rev erbalpha dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_rn",
"label": "Initial Model State Rn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.initial_model_state_rn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_18`."
},
{
"name": "initial_model_state_rc",
"label": "Initial Model State Rc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.initial_model_state_rc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_17`."
},
{
"name": "initial_model_state_pcp",
"label": "Initial Model State Pcp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.initial_model_state_pcp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_9`."
},
{
"name": "initial_model_state_pc",
"label": "Initial Model State Pc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.initial_model_state_pc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_8`."
},
{
"name": "initial_p_cnp",
"label": "Initial P Cnp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.initial_p_cnp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_14`."
},
{
"name": "initial_p_cn",
"label": "Initial P Cn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.initial_p_cn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_12`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.species_labels"
},
{
"name": "model_state_rn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.model_state_rn"
},
{
"name": "model_state_rc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.model_state_rc"
},
{
"name": "pcp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.pcp"
},
{
"name": "model_state_pc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.model_state_pc"
},
{
"name": "p_cnp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.p_cnp"
},
{
"name": "p_cn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.p_cn"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Leloup2003 Circclock Dd Rev Erbalpha Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model_state"
],
"from": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model_summary"
],
"from": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model_species_labels"
],
"from": "systemsbiology_sbml_leloup2003_circclock_dd_rev_erbalpha_biomd0000000074_model.species_labels"
}
],
"package": "leloup2003-circclock-dd-rev-erbalpha",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is model in continous darkness (DD) described in the article Toward a detailed computational model for the mammalian circadian clock This model features the full interlocked negative and positive. It can be used to explore systemsbiology leloup2003 circclock dd rev erbalpha dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageleloup2003-circclock-dd-rev-erbalpha
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother