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One published Lab
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Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
. It can be used to explore systemsbiology bakker2001 glycolysis BioModels0000000071 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_external",
"label": "Initial Glucose External",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.initial_glucose_external",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GlcE`."
},
{
"name": "initial_pyruvate_external",
"label": "Initial Pyruvate External",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.initial_pyruvate_external",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PyrE`."
},
{
"name": "initial_fructose_1_6_bisphosphate",
"label": "Initial Fructose 1 6 Bisphosphate",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.initial_fructose_1_6_bisphosphate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Fru16BP`."
},
{
"name": "initial_phosphates_in_glycosome",
"label": "Initial Phosphates In Glycosome",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.initial_phosphates_in_glycosome",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pg`."
},
{
"name": "initial_phosphates_cytosol",
"label": "Initial Phosphates Cytosol",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.initial_phosphates_cytosol",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pc`."
},
{
"name": "initial_pyruvate",
"label": "Initial Pyruvate",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.initial_pyruvate",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pyr`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.species_labels"
},
{
"name": "glucose_external",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.glucose_external"
},
{
"name": "pyruvate_external",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.pyruvate_external"
},
{
"name": "fructose_1_6_bisphosphate",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.fructose_1_6_bisphosphate"
},
{
"name": "phosphates_in_glycosome",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.phosphates_in_glycosome"
},
{
"name": "phosphates_cytosol",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.phosphates_cytosol"
},
{
"name": "pyruvate",
"maps_to": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.pyruvate"
}
]
},
"tags": [
"metabolism",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bakker2001 Glycolysis Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model_state"
],
"from": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model_summary"
],
"from": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model_species_labels"
],
"from": "systemsbiology_sbml_bakker2001_glycolysis_biomd0000000071_model.species_labels"
}
],
"package": "bakker2001-glycolysis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": ". It can be used to explore systemsbiology bakker2001 glycolysis BioModels0000000071 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebakker2001-glycolysis
Created2026-05-17
Updated2026-06-13
metabolismsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother