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Source-faithful physiology lab for Moore, Li, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cell_population_c",
"label": "Initial Cell Population C (source C)",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.initial_cell_population_c",
"description": "Initial value for Cell Population C (source C). Maps to source symbol `C`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state.",
"accepted_units": [
"cells_per_microlitre"
]
},
{
"name": "initial_cell_population_te",
"label": "Initial Cell Population Te (source Te)",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.initial_cell_population_te",
"description": "Initial value for Cell Population Te (source Te). Maps to source symbol `Te`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state.",
"accepted_units": [
"cells_per_microlitre"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.variable_labels"
},
{
"name": "cell_population_c",
"label": "Cell Population C (source C)",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.cell_population_c",
"description": "Cell Population C (source C). Maps to source symbol `C`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state."
},
{
"name": "cell_population_te",
"label": "Cell Population Te (source Te)",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.cell_population_te",
"description": "Cell Population Te (source Te). Maps to source symbol `Te`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state."
},
{
"name": "cell_population_tn",
"label": "Cell Population Tn (source Tn)",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.cell_population_tn",
"description": "Cell Population Tn (source Tn). Maps to source symbol `Tn`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state."
},
{
"name": "alpha_e",
"label": "Alpha E",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.alpha_e",
"description": "Alpha E. Maps to source symbol `alpha_e`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_n",
"label": "Alpha N",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.alpha_n",
"description": "Alpha N. Maps to source symbol `alpha_n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cmax",
"label": "Cmax",
"maps_to": "physiology_cellml_moore_li_2004_2d5_model.cmax",
"description": "Cmax. Maps to source symbol `Cmax`. Units: cells_per_microlitre. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Moore2004 - Li Mathematical Chronic Myelogenous Leukemia T Cell Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_moore_li_2004_2d5_model",
"parameters": {
"model_path": "data/moore_li_2004.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_moore_li_2004_2d5_model_state"
],
"from": "physiology_cellml_moore_li_2004_2d5_model.state"
},
{
"to": [
"visualisation.physiology_cellml_moore_li_2004_2d5_model_summary"
],
"from": "physiology_cellml_moore_li_2004_2d5_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_moore_li_2004_2d5_model_trajectory"
],
"from": "physiology_cellml_moore_li_2004_2d5_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_moore_li_2004_2d5_model_variable_labels"
],
"from": "physiology_cellml_moore_li_2004_2d5_model.variable_labels"
}
],
"package": "moore2004-li-mathematical-chronic-myelogenous-leukemia-t-cell",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Moore, Li, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagemoore2004-li-mathematical-chronic-myelogenous-leukemia-t-cell
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother