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Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_complement_factor_b",
"label": "Initial complement factor B",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.initial_complement_factor_b",
"description": "Initial level of complement factor B. Maps to SBML symbol `Factor_B`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_complement_factor_d",
"label": "Initial complement factor D",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.initial_complement_factor_d",
"description": "Initial level of complement factor D. Maps to SBML symbol `Factor_D`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_complement_factor_h",
"label": "Initial complement factor H",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.initial_complement_factor_h",
"description": "Initial level of complement factor H. Maps to SBML symbol `Factor_H`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "complement_c3b",
"label": "complement C3b",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.complement_c3b",
"description": "complement C3b. Maps to SBML symbol `C3b` and is emitted in native SBML units."
},
{
"name": "closed_complement_c3bb_complex",
"label": "closed complement C3bB complex",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.closed_complement_c3bb_complex",
"description": "closed complement C3bB complex. Maps to SBML symbol `C3bB_closed` and is emitted in native SBML units."
},
{
"name": "open_complement_c3bb_complex",
"label": "open complement C3bB complex",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.open_complement_c3bb_complex",
"description": "open complement C3bB complex. Maps to SBML symbol `C3bB_open` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"complement"
],
"title": "Bakshi2020 - Minimal model of alternative pathway of complement system Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model_state"
],
"from": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.state"
},
{
"to": [
"visualisation.signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model_summary"
],
"from": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model_species_labels"
],
"from": "signaling_sbml_bakshi2020_minimal_model_of_alternative_pathway_biomd0000001017_model.species_labels"
}
],
"package": "bakshi2020-minimal-model-of-alternative-pathway",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebakshi2020-minimal-model-of-alternative-pathway
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicomplementvisualisationother