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Curated microbiology lab for Shen-Orr2002_Single_Input_Module. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "input_regulator_level",
"maps_to": "shenorr2002_single_input_module.input_regulator_level"
}
],
"outputs": [
{
"name": "state",
"maps_to": "shenorr2002_single_input_module.state"
},
{
"name": "summary",
"maps_to": "shenorr2002_single_input_module.summary"
},
{
"name": "species_labels",
"maps_to": "shenorr2002_single_input_module.species_labels"
},
{
"name": "input_regulator",
"maps_to": "shenorr2002_single_input_module.input_regulator"
},
{
"name": "target_gene_1",
"maps_to": "shenorr2002_single_input_module.target_gene_1"
},
{
"name": "target_gene_2",
"maps_to": "shenorr2002_single_input_module.target_gene_2"
},
{
"name": "target_gene_3",
"maps_to": "shenorr2002_single_input_module.target_gene_3"
}
]
},
"title": "Shen-Orr2002_Single_Input_Module Lab",
"models": [
{
"path": "models/core",
"alias": "shenorr2002_single_input_module"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.shenorr2002_single_input_module_state"
],
"from": "shenorr2002_single_input_module.state"
},
{
"to": [
"visualisation.shenorr2002_single_input_module_summary"
],
"from": "shenorr2002_single_input_module.summary"
},
{
"to": [
"visualisation.shenorr2002_single_input_module_species_labels"
],
"from": "shenorr2002_single_input_module.species_labels"
},
{
"to": [
"visualisation.shenorr2002_single_input_module_input_regulator"
],
"from": "shenorr2002_single_input_module.input_regulator"
},
{
"to": [
"visualisation.shenorr2002_single_input_module_target_gene_1"
],
"from": "shenorr2002_single_input_module.target_gene_1"
},
{
"to": [
"visualisation.shenorr2002_single_input_module_target_gene_2"
],
"from": "shenorr2002_single_input_module.target_gene_2"
},
{
"to": [
"visualisation.shenorr2002_single_input_module_target_gene_3"
],
"from": "shenorr2002_single_input_module.target_gene_3"
}
],
"package": "shenorr2002-single-input-module",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Shen-Orr2002_Single_Input_Module. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packageshenorr2002-single-input-module
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother