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Source-faithful physiology lab for Atrial fibroblast model. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_transient_outward_k_current_oa_gate_oa",
"label": "Initial Transient Outward K Current Oa Gate Oa",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.initial_transient_outward_k_current_oa_gate_oa",
"description": "Initial value for Transient Outward K Current Oa Gate Oa. Maps to source symbol `oa`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.variable_labels"
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `i_NaK`. Units: picoA_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current_i_na_k_max",
"label": "Sodium Current I Na K Max",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.sodium_current_i_na_k_max",
"description": "Sodium Current I Na K Max. Maps to source symbol `i_NaK_max`. Units: picoA_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_potassium",
"label": "Intracellular Potassium",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.intracellular_potassium",
"description": "Intracellular Potassium. Maps to source symbol `K_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_conductance",
"label": "Sodium Conductance",
"maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.sodium_conductance",
"description": "Sodium Conductance. Maps to source symbol `g_b_Na`. Units: nanoS_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 4be - Atrial Fibroblast Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_atrial_fibroblast_model_4be_model",
"parameters": {
"model_path": "data/Morgan_atrial_fibroblast_2016.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_state"
],
"from": "physiology_cellml_atrial_fibroblast_model_4be_model.state"
},
{
"to": [
"visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_summary"
],
"from": "physiology_cellml_atrial_fibroblast_model_4be_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_trajectory"
],
"from": "physiology_cellml_atrial_fibroblast_model_4be_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_variable_labels"
],
"from": "physiology_cellml_atrial_fibroblast_model_4be_model.variable_labels"
}
],
"package": "physiome4be-atrial-fibroblast",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Atrial fibroblast model. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome4be-atrial-fibroblast
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother