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Source-faithful physiology lab for Kurata, Hisatome, Imanishi, Shibamoto, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_calcium_d_gate",
"label": "Initial Calcium D Gate",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.initial_calcium_d_gate",
"description": "Initial value for Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.variable_labels"
},
{
"name": "k12",
"label": "K12",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k12",
"description": "K12. Maps to source symbol `k12`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k14",
"label": "K14",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k14",
"description": "K14. Maps to source symbol `k14`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k1ni",
"label": "K1ni",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k1ni",
"description": "K1ni. Maps to source symbol `K1ni`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k1no",
"label": "K1no",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k1no",
"description": "K1no. Maps to source symbol `K1no`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k21",
"label": "K21",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k21",
"description": "K21. Maps to source symbol `k21`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k23",
"label": "K23",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k23",
"description": "K23. Maps to source symbol `k23`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Kurata2002 - Dynamical Description Sinoatrial Node Pacemaking Improved Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model",
"parameters": {
"model_path": "data/kurata_hisatome_imanishi_shibamoto_2002.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_state"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.state"
},
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_summary"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_trajectory"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_variable_labels"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.variable_labels"
}
],
"package": "kurata2002-dynamical-description-sinoatrial-node-pacema-bbe83004",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Kurata, Hisatome, Imanishi, Shibamoto, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekurata2002-dynamical-description-sinoatrial-node-pacema-bbe83004
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother