About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
described in: Pharmacokinetic-pharmacodynamic modeling of caffeine: Tolerance to pressor effects Shi J, Benowitz NL, Denaro CP and Sheiner LB. It can be used to explore dose-response dynamics and compare treatment scenarios across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_gut_caffeine_amount",
"label": "Initial Gut Caffeine Amount",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_gut_caffeine_amount"
},
{
"name": "initial_plasma_caffeine_concentration",
"label": "Initial Plasma Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_plasma_caffeine_concentration"
},
{
"name": "initial_effect_site_caffeine",
"label": "Initial Effect Site Caffeine",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_effect_site_caffeine"
},
{
"name": "initial_tolerance_state",
"label": "Initial Tolerance State",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_tolerance_state"
}
],
"outputs": [
{
"name": "state",
"label": "Tracked source state",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.species_labels"
},
{
"name": "gut_caffeine_amount",
"label": "Gut Caffeine Amount",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.gut_caffeine_amount"
},
{
"name": "plasma_caffeine_concentration",
"label": "Plasma Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.plasma_caffeine_concentration"
},
{
"name": "peripheral_caffeine_concentration",
"label": "Peripheral Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.peripheral_caffeine_concentration"
},
{
"name": "effect_site_caffeine_concentration",
"label": "Effect Site Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.effect_site_caffeine_concentration"
},
{
"name": "tolerance_state",
"label": "Tolerance State",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.tolerance_state"
}
]
},
"tags": [
"pharmacology",
"pharmacodynamics",
"cardiovascular",
"physiology",
"tolerance",
"sbml",
"tellurium",
"faithful",
"biomodels_ebi"
],
"title": "Shi1993_Caffeine_pressor_tolerance Lab",
"models": [
{
"path": "models/core",
"alias": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model",
"parameters": {
"model_path": "data/BIOMD0000000241.xml",
"integration_step": 0.2
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model_state"
],
"from": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.state"
},
{
"to": [
"visualisation.pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model_summary"
],
"from": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.summary"
},
{
"to": [
"visualisation.pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model_species_labels"
],
"from": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.species_labels"
}
],
"package": "shi1993-caffeine-pressor-tolerance",
"runtime": {
"duration": 60,
"initial_inputs": {},
"communication_step": 2
},
"version": "1.0.0",
"description": "described in: Pharmacokinetic-pharmacodynamic modeling of caffeine: Tolerance to pressor effects Shi J, Benowitz NL, Denaro CP and Sheiner LB. It can be used to explore dose-response dynamics and compare treatment scenarios across conditions.",
"schema_version": "2.0"
}Runtime
Duration60
Comms Step2
Runs
Total0
Completed0
Failed0
Metadata
Packageshi1993-caffeine-pressor-tolerance
Created2026-05-16
Updated2026-06-13
pharmacologypharmacodynamicscardiovascularphysiologytolerancesbmltelluriumfaithfulbiomodels_ebivisualisationother