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Clean Biosimulant lab for systems signaling model: Hayashi1999_NOSynth_Phospho. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_nos_calcium_m_ca4",
"label": "Initial NOS calcium M Ca4",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.initial_nos_calcium_m_ca4",
"description": "Initial level of NOS calcium M Ca4. Maps to SBML symbol `NOS_slash_CaM_minus_Ca4`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_nos_calcium_mkialpha",
"label": "Initial NOS calcium Mkialpha",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.initial_nos_calcium_mkialpha",
"description": "Initial level of NOS calcium Mkialpha. Maps to SBML symbol `NOS_slash_CaMKIalpha`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_nos_calcium_mkiialpha",
"label": "Initial NOS calcium Mkiialpha",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.initial_nos_calcium_mkiialpha",
"description": "Initial level of NOS calcium Mkiialpha. Maps to SBML symbol `NOS_slash_CaMKIIalpha`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "nos_calcium_calcium_mn_nos",
"label": "NOS Calcium Calcium Mn NOS",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.nos_calcium_calcium_mn_nos",
"description": "NOS Calcium Calcium Mn NOS. Maps to SBML symbol `NOS_slash_Ca_minus_CaMnNOS` and is emitted in native SBML units."
},
{
"name": "nos_calcium_calcium_mn_nos_kenz_kenz_cplx",
"label": "NOS Calcium Calcium Mn NOS Kenz Kenz Cplx",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.nos_calcium_calcium_mn_nos_kenz_kenz_cplx",
"description": "NOS Calcium Calcium Mn NOS Kenz Kenz Cplx. Maps to SBML symbol `NOS_slash_Ca_minus_CaMnNOS_slash_kenz_slash_kenz_cplx` and is emitted in native SBML units."
},
{
"name": "nos_calcium_mkiv_kenz_kenz_cplx",
"label": "NOS Calcium MKIV Kenz Kenz Cplx",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.nos_calcium_mkiv_kenz_kenz_cplx",
"description": "NOS Calcium MKIV Kenz Kenz Cplx. Maps to SBML symbol `NOS_slash_CaMKIV_slash_kenz_slash_kenz_cplx` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"neuroscience",
"physiology"
],
"title": "Hayashi1999_NOSynth_Phospho Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model_state"
],
"from": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.state"
},
{
"to": [
"visualisation.signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model_summary"
],
"from": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model_species_labels"
],
"from": "signaling_sbml_hayashi1999_nosynth_phospho_model4780784080_model.species_labels"
}
],
"package": "hayashi1999-nosynth-phospho",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Hayashi1999_NOSynth_Phospho. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehayashi1999-nosynth-phospho
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebineurosciencephysiologyvisualisationother