Cifelli2008 - whole-body vitamin A metabolism in humans Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_vitamin_a_metabolism_state_1",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.initial_vitamin_a_metabolism_state_1",
        "description": "Initial condition for vitamin a metabolism state 1. Maps to bundled SBML symbol `M_1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_vitamin_a_metabolism_state_2",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.initial_vitamin_a_metabolism_state_2",
        "description": "Initial condition for vitamin a metabolism state 2. Maps to bundled SBML symbol `M_2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_vitamin_a_metabolism_state_3",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.initial_vitamin_a_metabolism_state_3",
        "description": "Initial condition for vitamin a metabolism state 3. Maps to bundled SBML symbol `M_4`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_vitamin_a_metabolism_state_4",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.initial_vitamin_a_metabolism_state_4",
        "description": "Initial condition for vitamin a metabolism state 4. Maps to bundled SBML symbol `M_5`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_vitamin_a_metabolism_state_5",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.initial_vitamin_a_metabolism_state_5",
        "description": "Initial condition for vitamin a metabolism state 5. Maps to bundled SBML symbol `M_6`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "vitamin_a_metabolism_state_1",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.vitamin_a_metabolism_state_1"
      },
      {
        "name": "vitamin_a_metabolism_state_2",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.vitamin_a_metabolism_state_2"
      },
      {
        "name": "vitamin_a_metabolism_state_3",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.vitamin_a_metabolism_state_3"
      },
      {
        "name": "vitamin_a_metabolism_state_4",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.vitamin_a_metabolism_state_4"
      },
      {
        "name": "vitamin_a_metabolism_state_5",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.vitamin_a_metabolism_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.observable_labels"
      }
    ]
  },
  "title": "Cifelli2008 - whole-body vitamin A metabolism in humans Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model",
      "parameters": {
        "model_path": "data/MODEL2403080002.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model_observable_values"
      ],
      "from": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model_run_summary"
      ],
      "from": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model_observable_labels"
      ],
      "from": "metabolism_sbml_cifelli2008_whole_body_vitamin_a_metabolism_in_h_model2403080002_model.observable_labels"
    }
  ],
  "package": "cifelli2008-whole-body-vitamin-a-metabolism-in-humans",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Note that this model reimplementation does NOT predict the steady states presented in Table 3. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}