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Source-faithful physiology lab for Fridlyand2010_GlucoseSensitivity_B. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_atp_concentration",
"label": "Initial ATP Concentration",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.initial_atp_concentration",
"description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "initial_cam",
"label": "Initial Cam",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.initial_cam",
"description": "Initial value for Cam. Maps to source symbol `Cam`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.species_labels"
},
{
"name": "atp_concentration",
"label": "ATP Concentration",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.atp_concentration",
"description": "ATP Concentration. Maps to source symbol `ATP`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cam",
"label": "Cam",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.cam",
"description": "Cam. Maps to source symbol `Cam`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "g3_p",
"label": "G3 P",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.g3_p",
"description": "G3 P. Maps to source symbol `G3P`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_state_vm",
"label": "Model State Vm (source Vm)",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.model_state_vm",
"description": "Model State Vm (source Vm). Maps to source symbol `Vm`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "nadhc",
"label": "Nadhc",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.nadhc",
"description": "Nadhc. Maps to source symbol `NADHc`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "nadhm",
"label": "Nadhm",
"maps_to": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.nadhm",
"description": "Nadhm. Maps to source symbol `NADHm`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Fridlyand2010 - Glucosesensitivity B Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model",
"parameters": {
"model_path": "data/BIOMD0000000349.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model_state"
],
"from": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.state"
},
{
"to": [
"visualisation.physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model_summary"
],
"from": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model_trajectory"
],
"from": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model_species_labels"
],
"from": "physiology_sbml_fridlyand2010_glucosesensitivity_b_biomd0000000349_model.species_labels"
}
],
"package": "fridlyand2010-glucosesensitivity-b",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Fridlyand2010_GlucoseSensitivity_B. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagefridlyand2010-glucosesensitivity-b
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother