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This is a model of the coupled Natch, Wnt and FGF modules as described in: A. It can be used to explore systemsbiology goldbeter2008 somite segmentation clock notch dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ras_total",
"label": "Initial RAS Total",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.initial_ras_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rast`."
},
{
"name": "initial_erk_total",
"label": "Initial ERK Total",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.initial_erk_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ERKt`."
},
{
"name": "initial_active_ras",
"label": "Initial Active RAS",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.initial_active_ras",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rasa`."
},
{
"name": "initial_active_erk",
"label": "Initial Active ERK",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.initial_active_erk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ERKa`."
},
{
"name": "initial_lunatic_fringe_mrna",
"label": "Initial Lunatic Fringe MRNA",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.initial_lunatic_fringe_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MF`."
},
{
"name": "initial_dusp6_protein",
"label": "Initial Dusp6 Protein",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.initial_dusp6_protein",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Dusp`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.species_labels"
},
{
"name": "ras_total",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.ras_total"
},
{
"name": "erk_total",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.erk_total"
},
{
"name": "active_ras",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.active_ras"
},
{
"name": "active_erk",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.active_erk"
},
{
"name": "lunatic_fringe_mrna",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.lunatic_fringe_mrna"
},
{
"name": "dusp6_protein",
"maps_to": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.dusp6_protein"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Goldbeter2008 Somite Segmentation Clock Notch Wnt Fgf Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model_state"
],
"from": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model_summary"
],
"from": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model_species_labels"
],
"from": "systemsbiology_sbml_goldbeter2008_somite_segmentation_clock_notch_wn_biomd0000000201_model.species_labels"
}
],
"package": "goldbeter2008-somite-segmentation-clock-notch-wnt-fgf",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is a model of the coupled Natch, Wnt and FGF modules as described in: A. It can be used to explore systemsbiology goldbeter2008 somite segmentation clock notch dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegoldbeter2008-somite-segmentation-clock-notch-wnt-fgf
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother