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Tikidji-Hamburyan2018 - Rod phototransductionunder strong illumination This model is described in the article: Rods progressively escape saturation to drive visual responses in daylight conditions. It can be used to explore systemsbiology tikidji hamburyan2018 rod phototransduction unde dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_os_cp_trash_ca",
"label": "Initial Os Cp Trash Ca",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.initial_os_cp_trash_ca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S220`."
},
{
"name": "initial_is_cp_arr_bs_1_bs_2",
"label": "Initial Is Cp Arr Bs 1 Bs 2",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.initial_is_cp_arr_bs_1_bs_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S49`."
},
{
"name": "initial_os_dm_rhod_act_i_bs_1_ps_1_p0",
"label": "Initial Os Dm Rhod Act I Bs 1 Ps 1 P0",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.initial_os_dm_rhod_act_i_bs_1_ps_1_p0",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S11`."
},
{
"name": "initial_os_cp_gt_a_g_dp_1_gt_bg_bs_1_1_bs_2",
"label": "Initial Os Cp Gt A G Dp 1 Gt Bg Bs 1 1 Bs 2",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.initial_os_cp_gt_a_g_dp_1_gt_bg_bs_1_1_bs_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S44`."
},
{
"name": "initial_os_cp_rk_bs_1_1_rec_bs_1_2_w_ca2_bs_1_2_bs_2_1",
"label": "Initial Os Cp Rk Bs 1 1 Rec Bs 1 2 W CA2 Bs 1 2 Bs 2 1",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.initial_os_cp_rk_bs_1_1_rec_bs_1_2_w_ca2_bs_1_2_bs_2_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S24`."
},
{
"name": "initial_is_cp_rec_t_bs_1_bs_2",
"label": "Initial Is Cp Rec T Bs 1 Bs 2",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.initial_is_cp_rec_t_bs_1_bs_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S81`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.species_labels"
},
{
"name": "os_cp_trash_ca",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.os_cp_trash_ca"
},
{
"name": "is_cp_arr_bs_1_bs_2",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.is_cp_arr_bs_1_bs_2"
},
{
"name": "os_dm_rhod_act_i_bs_1_ps_1_p0",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.os_dm_rhod_act_i_bs_1_ps_1_p0"
},
{
"name": "os_cp_gt_a_g_dp_1_gt_bg_bs_1_1_bs_2",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.os_cp_gt_a_g_dp_1_gt_bg_bs_1_1_bs_2"
},
{
"name": "os_cp_rk_bs_1_1_rec_bs_1_2_w_ca2_bs_1_2_bs_2_1",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.os_cp_rk_bs_1_1_rec_bs_1_2_w_ca2_bs_1_2_bs_2_1"
},
{
"name": "is_cp_rec_t_bs_1_bs_2",
"maps_to": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.is_cp_rec_t_bs_1_bs_2"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Tikidji Hamburyan2018 Rod Phototransduction Under Strong Illumination Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model_state"
],
"from": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model_summary"
],
"from": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model_species_labels"
],
"from": "systemsbiology_sbml_tikidji_hamburyan2018_rod_phototransduction_unde_model1710030000_model.species_labels"
}
],
"package": "tikidji-hamburyan2018-rod-phototransduction-under-stron-4448bc86",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Tikidji-Hamburyan2018 - Rod phototransductionunder strong illumination This model is described in the article: Rods progressively escape saturation to drive visual responses in daylight conditions. It can be used to explore systemsbiology tikidji hamburyan2018 rod phototransduction unde dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetikidji-hamburyan2018-rod-phototransduction-under-stron-4448bc86
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother