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The model reproduces the time profile of cytoplasmic Calcium as depicted in Fig 3 of the paper. It can be used to explore systemsbiology lavrentovich2008 ca oscillations BioModels0000000184 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_in_er",
"label": "Initial Calcium In Er",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.initial_calcium_in_er",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
},
{
"name": "initial_model_state_ip3",
"label": "Initial Model State IP3",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.initial_model_state_ip3",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Z`."
},
{
"name": "initial_cytoplasmic_calcium",
"label": "Initial Cytoplasmic Calcium",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.initial_cytoplasmic_calcium",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.species_labels"
},
{
"name": "calcium_in_er",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.calcium_in_er"
},
{
"name": "ip3",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.ip3"
},
{
"name": "cytoplasmic_calcium",
"maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.cytoplasmic_calcium"
}
]
},
"tags": [
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Lavrentovich2008 Ca Oscillations Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model_state"
],
"from": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model_summary"
],
"from": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model_species_labels"
],
"from": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.species_labels"
}
],
"package": "lavrentovich2008-ca-oscillations",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "The model reproduces the time profile of cytoplasmic Calcium as depicted in Fig 3 of the paper. It can be used to explore systemsbiology lavrentovich2008 ca oscillations BioModels0000000184 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelavrentovich2008-ca-oscillations
Created2026-05-17
Updated2026-06-13
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother