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plant light/circadian clock. The model reproduces the time profile of TOC1 and Y mRNA for a 8:16 cycle as depicted in Fig7A and 7B. A simple algorithm in the event section accomplishes the 8 hour light and 16 hour dark cycle.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "toc1_messenger_rna",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.toc1_messenger_rna"
},
{
"name": "nuclear_y",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.nuclear_y"
},
{
"name": "prr7_messenger_rna",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.prr7_messenger_rna"
},
{
"name": "prr9_messenger_rna",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.prr9_messenger_rna"
},
{
"name": "state",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.state"
},
{
"name": "summary",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.summary"
},
{
"name": "species_labels",
"maps_to": "zeilinger2006_prr7_prr9_light_clock.species_labels"
}
]
},
"title": "Zeilinger2006 Prr7 Prr9 Light Clock Lab",
"models": [
{
"path": "models/core",
"alias": "zeilinger2006_prr7_prr9_light_clock",
"parameters": {
"model_path": "data/BIOMD0000000097.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_toc1_messenger_rna"
],
"from": "zeilinger2006_prr7_prr9_light_clock.toc1_messenger_rna"
},
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_nuclear_y"
],
"from": "zeilinger2006_prr7_prr9_light_clock.nuclear_y"
},
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_prr7_messenger_rna"
],
"from": "zeilinger2006_prr7_prr9_light_clock.prr7_messenger_rna"
},
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_prr9_messenger_rna"
],
"from": "zeilinger2006_prr7_prr9_light_clock.prr9_messenger_rna"
},
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_state"
],
"from": "zeilinger2006_prr7_prr9_light_clock.state"
},
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_summary"
],
"from": "zeilinger2006_prr7_prr9_light_clock.summary"
},
{
"to": [
"visualisation.zeilinger2006_prr7_prr9_light_clock_species_labels"
],
"from": "zeilinger2006_prr7_prr9_light_clock.species_labels"
}
],
"package": "zeilinger2006-prr7-prr9-light-clock",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "plant light/circadian clock. The model reproduces the time profile of TOC1 and Y mRNA for a 8:16 cycle as depicted in Fig7A and 7B. A simple algorithm in the event section accomplishes the 8 hour light and 16 hour dark cycle.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagezeilinger2006-prr7-prr9-light-clock
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother