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Source-faithful physiology lab for Nampala2013 - Liver enzyme elevation in HIV mono-infection. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_a",
"label": "Initial Model State A (source A)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.initial_model_state_a",
"description": "Initial value for Model State A (source A). Maps to source symbol `A`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "initial_model_state_e",
"label": "Initial Model State E (source E)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.initial_model_state_e",
"description": "Initial value for Model State E (source E). Maps to source symbol `E`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.species_labels"
},
{
"name": "model_state_i_c",
"label": "Model State I C (source I_c)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.model_state_i_c",
"description": "Model State I C (source I_c). Maps to source symbol `I_c`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_i_h",
"label": "Model State I H (source I_h)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.model_state_i_h",
"description": "Model State I H (source I_h). Maps to source symbol `I_h`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_t_c",
"label": "Model State T C (source T_c)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.model_state_t_c",
"description": "Model State T C (source T_c). Maps to source symbol `T_c`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_t_h",
"label": "Model State T H (source T_h)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.model_state_t_h",
"description": "Model State T H (source T_h). Maps to source symbol `T_h`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_a",
"label": "Model State A (source A)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.model_state_a",
"description": "Model State A (source A). Maps to source symbol `A`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_e",
"label": "Model State E (source E)",
"maps_to": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.model_state_e",
"description": "Model State E (source E). Maps to source symbol `E`. Units: native SBML value. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Nampala2013 - Liver Enzyme Elevation Hiv Mono I Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model",
"parameters": {
"model_path": "data/MODEL1812040002.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model_state"
],
"from": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.state"
},
{
"to": [
"visualisation.physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model_summary"
],
"from": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model_trajectory"
],
"from": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model_species_labels"
],
"from": "physiology_sbml_nampala2013_liver_enzyme_elevation_in_hiv_mono_i_model1812040002_model.species_labels"
}
],
"package": "nampala2013-liver-enzyme-elevation-hiv-mono-i",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Nampala2013 - Liver enzyme elevation in HIV mono-infection. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagenampala2013-liver-enzyme-elevation-hiv-mono-i
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother