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Source-faithful physiology lab for Mahajan, Shiferaw, Sato, Baher, Olcese, Xie, Yang, Chen, Restrepo, Karma, Garfinkel, Qu, Weiss, 2008. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
},
{
"name": "initial_intracellular_sodium",
"label": "Initial Intracellular Sodium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.initial_intracellular_sodium",
"description": "Initial value for Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.variable_labels"
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_calcium",
"label": "Extracellular Calcium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.extracellular_calcium",
"description": "Extracellular Calcium. Maps to source symbol `Ca_o`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_sodium",
"label": "Extracellular Sodium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.extracellular_sodium",
"description": "Extracellular Sodium. Maps to source symbol `Na_o`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "extracellular_potassium",
"label": "Extracellular Potassium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.extracellular_potassium",
"description": "Extracellular Potassium. Maps to source symbol `K_o`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_potassium",
"label": "Intracellular Potassium",
"maps_to": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.intracellular_potassium",
"description": "Intracellular Potassium. Maps to source symbol `K_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Mahajan2008 - Rabbit Ventricular Action Potential Replicating Cardiac Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model",
"parameters": {
"model_path": "data/mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_restrepo_karma_garfinkel_qu_weiss_2008.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model_state"
],
"from": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.state"
},
{
"to": [
"visualisation.physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model_summary"
],
"from": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model_trajectory"
],
"from": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model_variable_labels"
],
"from": "physiology_cellml_mahajan_shiferaw_sato_baher_olcese_xie_yang_chen_mahajanshiferawsatobaherolcesexieyangchenrestrepokarmagarfinkelquweiss2008_model.variable_labels"
}
],
"package": "mahajan2008-rabbit-ventricular-action-potential-replica-053d02cc",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Mahajan, Shiferaw, Sato, Baher, Olcese, Xie, Yang, Chen, Restrepo, Karma, Garfinkel, Qu, Weiss, 2008. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagemahajan2008-rabbit-ventricular-action-potential-replica-053d02cc
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother