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Source-faithful physiology lab for A pharmacokinetic (PK) model of acetaminophen for neonates. Public controls and outputs are mapped to real source symbols for pharmacokinetics.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cp_concentration",
"label": "Initial Cp Concentration",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.initial_cp_concentration",
"description": "Initial value for Cp Concentration. Maps to source symbol `Cp`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mg_per_litre"
]
},
{
"name": "initial_cp_g",
"label": "Initial Cp G",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.initial_cp_g",
"description": "Initial value for Cp G. Maps to source symbol `Cp_G`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mg_per_litre"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.variable_labels"
},
{
"name": "volume",
"label": "Volume",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.volume",
"description": "Volume. Maps to source symbol `V`. Units: litre. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cp_concentration",
"label": "Cp Concentration",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.cp_concentration",
"description": "Cp Concentration. Maps to source symbol `Cp`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cp_g",
"label": "Cp G",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.cp_g",
"description": "Cp G. Maps to source symbol `Cp_G`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cp_s",
"label": "Cp S",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.cp_s",
"description": "Cp S. Maps to source symbol `Cp_S`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_state_u_cm",
"label": "Model State U Cm (source U_CM)",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.model_state_u_cm",
"description": "Model State U Cm (source U_CM). Maps to source symbol `U_CM`. Units: mg. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "model_state_u_g",
"label": "Model State U G (source U_G)",
"maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.model_state_u_g",
"description": "Model State U G (source U_G). Maps to source symbol `U_G`. Units: mg. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Physiome b17 - Pharmacokinetic PK Acetaminophen Neonates Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model",
"parameters": {
"model_path": "data/APAP_Pediatric.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_state"
],
"from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.state"
},
{
"to": [
"visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_summary"
],
"from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_trajectory"
],
"from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_variable_labels"
],
"from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.variable_labels"
}
],
"package": "physiomeb17-pharmacokinetic-pk-acetaminophen-neonates",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for A pharmacokinetic (PK) model of acetaminophen for neonates. Public controls and outputs are mapped to real source symbols for pharmacokinetics.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiomeb17-pharmacokinetic-pk-acetaminophen-neonates
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother