About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Single-model lab wrapper for Paiva2020 - SEIAHRD model of transmission dynamics of COVID-19. This paper proposes a dynamic model to describe and forecast the dynamics of the coronavirus disease COVID-19 transmission. The model is based on an approach previously used to describe the Middle Eas.
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_rate",
"label": "Transmission Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.transmission_rate"
},
{
"name": "incubation_rate",
"label": "Incubation Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.incubation_rate"
},
{
"name": "asymptomatic_fraction",
"label": "Asymptomatic Fraction",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.asymptomatic_fraction"
},
{
"name": "hospitalization_rate",
"label": "Hospitalization Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.hospitalization_rate"
},
{
"name": "hospital_mortality_rate",
"label": "Hospital Mortality Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.hospital_mortality_rate"
},
{
"name": "infectious_mortality_rate",
"label": "Infectious Mortality Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.infectious_mortality_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.species_labels"
},
{
"name": "exposed",
"label": "Exposed",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.exposed"
},
{
"name": "infectious",
"label": "Infectious",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.infectious"
},
{
"name": "hospitalized",
"label": "Hospitalized",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.hospitalized"
},
{
"name": "deceased",
"label": "Deceased",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.deceased"
},
{
"name": "susceptible",
"label": "Susceptible",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.susceptible"
},
{
"name": "recovered",
"label": "Recovered",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.recovered"
},
{
"name": "asymptomatic",
"label": "Asymptomatic",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.asymptomatic"
},
{
"name": "cumulative_cases",
"label": "Cumulative Cases",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.cumulative_cases"
}
]
},
"title": "Paiva2020 - SEIAHRD model of transmission dynamics of COVID-19 Lab",
"models": [
{
"path": "models/core",
"alias": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model",
"parameters": {
"model_path": "data/BIOMD0000000960.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model_state"
],
"from": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model_summary"
],
"from": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model_species_labels"
],
"from": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.species_labels"
}
],
"package": "paiva2020-covid-seiahrd",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Paiva2020 - SEIAHRD model of transmission dynamics of COVID-19. This paper proposes a dynamic model to describe and forecast the dynamics of the coronavirus disease COVID-19 transmission. The model is based on an approach previously used to describe the Middle Eas.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepaiva2020-covid-seiahrd
Created2026-05-15
Updated2026-06-13
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisationother