Galazzo1990_FermentationPathwayKinetics Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_inside_the_cell",
        "units": "native SBML value",
        "default": 0.0345,
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.initial_glucose_inside_the_cell",
        "description": "Initial condition for glucose inside the cell. Maps to bundled SBML symbol `Glci`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 1.19,
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 1.011,
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_1_6_phosphate",
        "units": "native SBML value",
        "default": 9.144,
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.initial_fructose_1_6_phosphate",
        "description": "Initial condition for fructose 1 6 phosphate. Maps to bundled SBML symbol `FDP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_phosphoenol_pyruvate",
        "units": "native SBML value",
        "default": 0.0095,
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.initial_phosphoenol_pyruvate",
        "description": "Initial condition for phosphoenol pyruvate. Maps to bundled SBML symbol `PEP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glucose_inside_the_cell",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.glucose_inside_the_cell"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.atp"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.glucose_6_phosphate"
      },
      {
        "name": "fructose_1_6_phosphate",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.fructose_1_6_phosphate"
      },
      {
        "name": "phosphoenol_pyruvate",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.phosphoenol_pyruvate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.observable_labels"
      }
    ]
  },
  "title": "Galazzo1990_FermentationPathwayKinetics Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model",
      "parameters": {
        "model_path": "data/BIOMD0000000063.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model_observable_values"
      ],
      "from": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model_run_summary"
      ],
      "from": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model_observable_labels"
      ],
      "from": "metabolism_sbml_galazzo1990_fermentationpathwaykinetics_biomd0000000063_model.observable_labels"
    }
  ],
  "package": "galazzo1990-fermentationpathwaykinetics",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "This a model from the article: Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae Jorge L. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}