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Source-faithful physiology lab for A computational human ventricular electrophysiological model. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_intracellular_sodium_concentration",
"label": "Initial Intracellular Sodium Concentration",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.initial_intracellular_sodium_concentration",
"description": "Initial value for Intracellular Sodium Concentration. Maps to source symbol `nai`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millimolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium_concentration",
"label": "Intracellular Sodium Concentration",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.intracellular_sodium_concentration",
"description": "Intracellular Sodium Concentration. Maps to source symbol `nai`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_potassium_concentration",
"label": "Intracellular Potassium Concentration",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.intracellular_potassium_concentration",
"description": "Intracellular Potassium Concentration. Maps to source symbol `ki`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "i_stim_amplitude",
"label": "I Stim Amplitude",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.i_stim_amplitude",
"description": "I Stim Amplitude. Maps to source symbol `i_Stim_Amplitude`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "i_stim_end",
"label": "I Stim End",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.i_stim_end",
"description": "I Stim End. Maps to source symbol `i_Stim_End`. Units: millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "i_stim_period",
"label": "I Stim Period",
"maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.i_stim_period",
"description": "I Stim Period. Maps to source symbol `i_Stim_Period`. Units: millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 5e2 - Computational Human Ventricular Electrophysiological Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model",
"parameters": {
"model_path": "data/Tomek_model_endo.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_state"
],
"from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.state"
},
{
"to": [
"visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_summary"
],
"from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_trajectory"
],
"from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_variable_labels"
],
"from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.variable_labels"
}
],
"package": "physiome5e2-computational-human-ventricular-electrophysiological",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for A computational human ventricular electrophysiological model. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome5e2-computational-human-ventricular-electrophysiological
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother