Li2009- Assymetric Caulobacter cell cycle Lab

{
  "io": {
    "inputs": [
      {
        "name": "ks_dna_a1",
        "label": "Ks,DNA A1",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ks_dna_a1",
        "description": "Controls Ks,DNA A1 in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ks_dna_a1`."
      },
      {
        "name": "ks_dna_a2",
        "label": "Ks,DNA A2",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ks_dna_a2",
        "description": "Controls Ks,DNA A2 in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ks_dna_a2`."
      },
      {
        "name": "kd_dna_a",
        "label": "Kd,DnaA",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.kd_dna_a",
        "description": "Controls Kd,DnaA in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.kd_dna_a`."
      },
      {
        "name": "ji_dna_active_gcr_a",
        "label": "Ji DNA Active GcrA",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ji_dna_active_gcr_a",
        "description": "Controls Ji DNA Active GcrA in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ji_dna_active_gcr_a`."
      },
      {
        "name": "phosphorylated_ja_dna_ctr_a",
        "label": "Phosphorylated Ja DNA CtrA",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_ja_dna_ctr_a",
        "description": "Controls Phosphorylated Ja DNA CtrA in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_ja_dna_ctr_a`."
      },
      {
        "name": "ja_fts_q_dna",
        "label": "Ja,Fts Q,DNA",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ja_fts_q_dna",
        "description": "Controls Ja,Fts Q,DNA in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ja_fts_q_dna`."
      }
    ],
    "outputs": [
      {
        "name": "dna_a_replication_initiator",
        "label": "DnaA replication initiator",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.dna_a_replication_initiator",
        "description": "Tracks DnaA replication initiator in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.dna_a_replication_initiator`."
      },
      {
        "name": "gcr_a_transcriptional_regulator",
        "label": "GcrA transcriptional regulator",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.gcr_a_transcriptional_regulator",
        "description": "Tracks GcrA transcriptional regulator in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.gcr_a_transcriptional_regulator`."
      },
      {
        "name": "ctr_a_cell_cycle_regulator",
        "label": "CtrA cell-cycle regulator",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ctr_a_cell_cycle_regulator",
        "description": "Tracks CtrA cell-cycle regulator in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ctr_a_cell_cycle_regulator`."
      },
      {
        "name": "phosphorylated_ctr_a",
        "label": "Phosphorylated CtrA",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_ctr_a",
        "description": "Tracks Phosphorylated CtrA in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_ctr_a`."
      },
      {
        "name": "div_k_polarity_regulator",
        "label": "DivK polarity regulator",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.div_k_polarity_regulator",
        "description": "Tracks DivK polarity regulator in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.div_k_polarity_regulator`."
      },
      {
        "name": "phosphorylated_div_k",
        "label": "Phosphorylated DivK",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_div_k",
        "description": "Tracks Phosphorylated DivK in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_div_k`."
      },
      {
        "name": "model_state_i",
        "label": "Model state I",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.model_state_i",
        "description": "Tracks Model state I in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.model_state_i`."
      },
      {
        "name": "ccr_model_state_m",
        "label": "Ccr Model state M",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ccr_model_state_m",
        "description": "Tracks Ccr Model state M in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.ccr_model_state_m`."
      },
      {
        "name": "hcori",
        "label": "Hcori",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hcori",
        "description": "Tracks Hcori in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hcori`."
      },
      {
        "name": "hctr_a",
        "label": "Hctr A",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hctr_a",
        "description": "Tracks Hctr A in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hctr_a`."
      },
      {
        "name": "hccr_model_state_m",
        "label": "Hccr Model state M",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hccr_model_state_m",
        "description": "Tracks Hccr Model state M in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hccr_model_state_m`."
      },
      {
        "name": "hfts_model_state_z",
        "label": "Hfts Model state Z",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hfts_model_state_z",
        "description": "Tracks Hfts Model state Z in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.hfts_model_state_z`."
      },
      {
        "name": "replication_initiation_state",
        "label": "Replication initiation state",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.replication_initiation_state",
        "description": "Tracks Replication initiation state in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.replication_initiation_state`."
      },
      {
        "name": "dna_replication_state",
        "label": "DNA replication state",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.dna_replication_state",
        "description": "Tracks DNA replication state in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.dna_replication_state`."
      },
      {
        "name": "division_event_counter",
        "label": "Division event counter",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.division_event_counter",
        "description": "Tracks Division event counter in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.division_event_counter`."
      },
      {
        "name": "pod_jl",
        "label": "Pod JL",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.pod_jl",
        "description": "Tracks Pod JL in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.pod_jl`."
      },
      {
        "name": "phosphorylated_per",
        "label": "Phosphorylated Per",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_per",
        "description": "Tracks Phosphorylated Per in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_per`."
      },
      {
        "name": "div_j",
        "label": "Div J",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.div_j",
        "description": "Tracks Div J in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.div_j`."
      },
      {
        "name": "phosphorylated_cck_a",
        "label": "Phosphorylated Cck A",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_cck_a",
        "description": "Tracks Phosphorylated Cck A in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_cck_a`."
      },
      {
        "name": "cpd_model_state_r",
        "label": "Cpd Model state R",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cpd_model_state_r",
        "description": "Tracks Cpd Model state R in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cpd_model_state_r`."
      },
      {
        "name": "rcd_a",
        "label": "Rcd A",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.rcd_a",
        "description": "Tracks Rcd A in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.rcd_a`."
      },
      {
        "name": "phosphorylated_par_aad",
        "label": "Phosphorylated Par AAD",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_par_aad",
        "description": "Tracks Phosphorylated Par AAD in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.phosphorylated_par_aad`."
      },
      {
        "name": "fts_model_state_z",
        "label": "Fts Model state Z",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.fts_model_state_z",
        "description": "Tracks Fts Model state Z in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.fts_model_state_z`."
      },
      {
        "name": "z_ring",
        "label": "Z-ring",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.z_ring",
        "description": "Tracks Z-ring in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.z_ring`."
      },
      {
        "name": "cck_active_tot",
        "label": "Cck Active Tot",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cck_active_tot",
        "description": "Tracks Cck Active Tot in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cck_active_tot`."
      },
      {
        "name": "cpd_model_state_r_tot",
        "label": "Cpd Model state R Tot",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cpd_model_state_r_tot",
        "description": "Tracks Cpd Model state R Tot in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cpd_model_state_r_tot`."
      },
      {
        "name": "par_active_tot",
        "label": "Par Active Tot",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.par_active_tot",
        "description": "Tracks Par Active Tot in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.par_active_tot`."
      },
      {
        "name": "cell_elongation_state",
        "label": "Cell elongation state",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cell_elongation_state",
        "description": "Tracks Cell elongation state in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.cell_elongation_state`."
      },
      {
        "name": "model_state_z_z",
        "label": "Model state Z (Z)",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.model_state_z_z",
        "description": "Tracks Model state Z (Z) in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.model_state_z_z`."
      },
      {
        "name": "fts_q",
        "label": "Fts Q",
        "maps_to": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.fts_q",
        "description": "Tracks Fts Q in the lab model via `cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.fts_q`."
      }
    ]
  },
  "title": "Li2009- Assymetric Caulobacter cell cycle Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model"
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model_state"
      ],
      "from": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model_summary"
      ],
      "from": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model_species_labels"
      ],
      "from": "cellcycle_sbml_li2009_assymetric_caulobacter_cell_cycle_biomd0000000727_model.species_labels"
    }
  ],
  "package": "li2009-caulobacter-asymmetric-cycle",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "Single-model lab wrapper for Li2009- Assymetric Caulobacter cell cycle. The asymmetric cell division cycle of Caulobacter crescentus is orchestrated by an elaborate gene-protein regulatory network, centered on three major control proteins, DnaA, GcrA and CtrA. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
  "schema_version": "2.0"
}