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calcium-modulated transcription factor activation. This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. It can be used to explore generegulation zhu2007 tf modulated by calcium dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "active_transcription_factor",
"maps_to": "zhu2007_calcium_transcription_factor.active_transcription_factor"
},
{
"name": "stored_calcium",
"maps_to": "zhu2007_calcium_transcription_factor.stored_calcium"
},
{
"name": "cytoplasmic_calcium",
"maps_to": "zhu2007_calcium_transcription_factor.cytoplasmic_calcium"
},
{
"name": "state",
"maps_to": "zhu2007_calcium_transcription_factor.state"
},
{
"name": "summary",
"maps_to": "zhu2007_calcium_transcription_factor.summary"
},
{
"name": "species_labels",
"maps_to": "zhu2007_calcium_transcription_factor.species_labels"
}
]
},
"title": "Zhu2007 Calcium Transcription Factor Lab",
"models": [
{
"path": "models/core",
"alias": "zhu2007_calcium_transcription_factor",
"parameters": {
"model_path": "data/BIOMD0000000166.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.zhu2007_calcium_transcription_factor_active_transcription_factor"
],
"from": "zhu2007_calcium_transcription_factor.active_transcription_factor"
},
{
"to": [
"visualisation.zhu2007_calcium_transcription_factor_stored_calcium"
],
"from": "zhu2007_calcium_transcription_factor.stored_calcium"
},
{
"to": [
"visualisation.zhu2007_calcium_transcription_factor_cytoplasmic_calcium"
],
"from": "zhu2007_calcium_transcription_factor.cytoplasmic_calcium"
},
{
"to": [
"visualisation.zhu2007_calcium_transcription_factor_state"
],
"from": "zhu2007_calcium_transcription_factor.state"
},
{
"to": [
"visualisation.zhu2007_calcium_transcription_factor_summary"
],
"from": "zhu2007_calcium_transcription_factor.summary"
},
{
"to": [
"visualisation.zhu2007_calcium_transcription_factor_species_labels"
],
"from": "zhu2007_calcium_transcription_factor.species_labels"
}
],
"package": "zhu2007-calcium-transcription-factor",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.1",
"description": "calcium-modulated transcription factor activation. This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. It can be used to explore generegulation zhu2007 tf modulated by calcium dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagezhu2007-calcium-transcription-factor
Created2026-05-15
Updated2026-06-13
generegulationsbmlbiomodels_ebifaithfulvisualisationother