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Source-faithful physiology lab for Test cellml model(s) for LibOmexMeta. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.variable_labels"
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_ion_f",
"label": "Ca Ion F",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_f",
"description": "Ca Ion F. Maps to source symbol `F`. Units: faradays_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_ion_n",
"label": "Ca Ion N",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_n",
"description": "Ca Ion N. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_ion_r",
"label": "Ca Ion R",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_r",
"description": "Ca Ion R. Maps to source symbol `R`. Units: gas_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_ion_t",
"label": "Ca Ion T",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_t",
"description": "Ca Ion T. Maps to source symbol `T`. Units: K. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_ion_z",
"label": "Ca Ion Z",
"maps_to": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.ca_ion_z",
"description": "Ca Ion Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 610 - Test S Lib Omex Meta Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model",
"parameters": {
"model_path": "data/nernst_eg.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_state"
],
"from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.state"
},
{
"to": [
"visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_summary"
],
"from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_trajectory"
],
"from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model_variable_labels"
],
"from": "physiology_cellml_test_cellml_model_s_for_libomexmeta_610_model.variable_labels"
}
],
"package": "physiome610-test-s-lib-omex-meta",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Test cellml model(s) for LibOmexMeta. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome610-test-s-lib-omex-meta
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother