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This model is from the article: Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii Ines Heiland, Christian Boden. It can be used to explore systemsbiology heiland2012 circadianclock c reinhardtii BioModels0000000411 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c3_mrna",
"label": "Initial C3 MRNA",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.initial_c3_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s9`."
},
{
"name": "initial_c3_gene",
"label": "Initial C3 Gene",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.initial_c3_gene",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s2`."
},
{
"name": "initial_c1_mrna",
"label": "Initial C1 MRNA",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.initial_c1_mrna",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_2`."
},
{
"name": "initial_c1c3complex",
"label": "Initial C1c3complex",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.initial_c1c3complex",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_4`."
},
{
"name": "initial_c_3_pre",
"label": "Initial C 3 Pre",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.initial_c_3_pre",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s13`."
},
{
"name": "initial_c_3_p",
"label": "Initial C 3 P",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.initial_c_3_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `s11`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.species_labels"
},
{
"name": "c3_mrna",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.c3_mrna"
},
{
"name": "c3_gene",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.c3_gene"
},
{
"name": "c1_mrna",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.c1_mrna"
},
{
"name": "c1c3complex",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.c1c3complex"
},
{
"name": "c_3_pre",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.c_3_pre"
},
{
"name": "c_3_p",
"maps_to": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.c_3_p"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Heiland2012 Circadianclock C Reinhardtii Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model_state"
],
"from": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model_summary"
],
"from": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model_species_labels"
],
"from": "systemsbiology_sbml_heiland2012_circadianclock_c_reinhardtii_biomd0000000411_model.species_labels"
}
],
"package": "heiland2012-circadianclock-c-reinhardtii",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model is from the article: Modeling temperature entrainment of circadian clocks using the Arrhenius equation and a reconstructed model from Chlamydomonas reinhardtii Ines Heiland, Christian Boden. It can be used to explore systemsbiology heiland2012 circadianclock c reinhardtii BioModels0000000411 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageheiland2012-circadianclock-c-reinhardtii
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother