Stilianakis1997 - Mathematical Pathogenesis Aids Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_anti_hiv_activity",
        "label": "Initial Anti HIV Activity",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.initial_anti_hiv_activity",
        "description": "Initial value for Anti HIV Activity. Maps to source symbol `Z`. Units: dimensionless. Naming evidence: source metadata names `Z` as `anti-HIV activity`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_free_hiv_particles",
        "label": "Initial Free HIV Particles",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.initial_free_hiv_particles",
        "description": "Initial value for Free HIV Particles. Maps to source symbol `V`. Units: dimensionless. Naming evidence: source metadata names `V` as `free HIV particles`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.variable_labels"
      },
      {
        "name": "anti_hiv_activity",
        "label": "Anti HIV Activity",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.anti_hiv_activity",
        "description": "Anti HIV Activity. Maps to source symbol `Z`. Units: dimensionless. Naming evidence: source metadata names `Z` as `anti-HIV activity`."
      },
      {
        "name": "free_hiv_particles",
        "label": "Free HIV Particles",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.free_hiv_particles",
        "description": "Free HIV Particles. Maps to source symbol `V`. Units: dimensionless. Naming evidence: source metadata names `V` as `free HIV particles`."
      },
      {
        "name": "cd4_positive_t_cell_infection_rate",
        "label": "CD4 Positive T Cell Infection Rate",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.cd4_positive_t_cell_infection_rate",
        "description": "CD4 Positive T Cell Infection Rate. Maps to source symbol `K`. Units: first_order_rate_constant. Naming evidence: source metadata names `K` as `CD4+ T cell infection rate`."
      },
      {
        "name": "infected_cd4_positive_t_cells",
        "label": "Infected CD4 Positive T Cells",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.infected_cd4_positive_t_cells",
        "description": "Infected CD4 Positive T Cells. Maps to source symbol `Y`. Units: dimensionless. Naming evidence: source metadata names `Y` as `infected CD4+ T cells`."
      },
      {
        "name": "susceptible_cd4_positive_t_cells",
        "label": "Susceptible CD4 Positive T Cells",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.susceptible_cd4_positive_t_cells",
        "description": "Susceptible CD4 Positive T Cells. Maps to source symbol `X`. Units: dimensionless. Naming evidence: source metadata names `X` as `susceptible CD4+ T cells`."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Stilianakis1997 - Mathematical Pathogenesis Aids Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model",
      "parameters": {
        "model_path": "data/stilianakis_dietz_schenzle_1997.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model_state"
      ],
      "from": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model_summary"
      ],
      "from": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model_trajectory"
      ],
      "from": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model_variable_labels"
      ],
      "from": "physiology_cellml_stilianakis_dietz_schenzle_1997_stilianakisdietzschenzle1997_model.variable_labels"
    }
  ],
  "package": "stilianakis1997-mathematical-pathogenesis-aids",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Stilianakis, Dietz, Schenzle, 1997. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}