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Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_g1_state",
"label": "Initial source-defined G1 state",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.initial_source_defined_g1_state",
"description": "Initial level of source-defined G1 state. Maps to SBML symbol `g1_0`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_g2_state",
"label": "Initial source-defined G2 state",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.initial_source_defined_g2_state",
"description": "Initial level of source-defined G2 state. Maps to SBML symbol `g2_0`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "mapk",
"label": "MAPK",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.mapk",
"description": "MAPK. Maps to SBML symbol `MAPK` and is emitted in native SBML units."
},
{
"name": "c_raf_inactive",
"label": "C RAF Inactive",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.c_raf_inactive",
"description": "C RAF Inactive. Maps to SBML symbol `C_Raf_inactive` and is emitted in native SBML units."
},
{
"name": "source_defined_fgfr_state",
"label": "source-defined FGFR state",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.source_defined_fgfr_state",
"description": "source-defined FGFR state. Maps to SBML symbol `FGFR` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk"
],
"title": "Muller2008 - Simplified MAPK activation Dynamics (Model B) Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model_state"
],
"from": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.state"
},
{
"to": [
"visualisation.signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model_summary"
],
"from": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model_species_labels"
],
"from": "signaling_sbml_muller2008_simplified_mapk_activation_dynamics_m_biomd0000000664_model.species_labels"
}
],
"package": "muller2008-simplified-mapk-activation-dynamics-m",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemuller2008-simplified-mapk-activation-dynamics-m
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkvisualisationother