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Source-faithful physiology lab for Irvine, Jafri, Winslow, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_oxygen",
"label": "Initial Oxygen",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.initial_oxygen",
"description": "Initial value for Oxygen. Maps to source symbol `O2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_c0_i",
"label": "Initial C0 I",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.initial_c0_i",
"description": "Initial value for C0 I. Maps to source symbol `C0I`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: V. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_conductance",
"label": "Sodium Conductance",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.sodium_conductance",
"description": "Sodium Conductance. Maps to source symbol `g_Na`. Units: per_V. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `i_Na`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_reversal_potential",
"label": "Sodium Reversal Potential",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.sodium_reversal_potential",
"description": "Sodium Reversal Potential. Maps to source symbol `E_Na`. Units: V. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "oxygen",
"label": "Oxygen",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.oxygen",
"description": "Oxygen. Maps to source symbol `O2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c0_i",
"label": "C0 I",
"maps_to": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.c0_i",
"description": "C0 I. Maps to source symbol `C0I`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Irvine1999 - Lisa Markov Cardiac Sodium Channel Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model",
"parameters": {
"model_path": "data/irvine_jafri_winslow_1999.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model_state"
],
"from": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.state"
},
{
"to": [
"visualisation.physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model_summary"
],
"from": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model_trajectory"
],
"from": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model_variable_labels"
],
"from": "physiology_cellml_irvine_jafri_winslow_1999_irvinejafriwinslow1999_model.variable_labels"
}
],
"package": "irvine1999-lisa-markov-cardiac-sodium-channel",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Irvine, Jafri, Winslow, 1999. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageirvine1999-lisa-markov-cardiac-sodium-channel
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother