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Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_intracellular_calcium",
"label": "Initial intracellular calcium",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.initial_intracellular_calcium",
"description": "Initial level of intracellular calcium. Maps to SBML symbol `CaI`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "intracellular_calcium",
"label": "intracellular calcium",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.intracellular_calcium",
"description": "intracellular calcium. Maps to SBML symbol `CaI` and is emitted in native SBML units."
},
{
"name": "pmca_calcium_pump",
"label": "PMCA calcium pump",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.pmca_calcium_pump",
"description": "PMCA calcium pump. Maps to SBML symbol `mwaf195932_a72c_4552_8cf2_b349b15d39c4` and is emitted in native SBML units."
},
{
"name": "serca_calcium_pump",
"label": "SERCA calcium pump",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.serca_calcium_pump",
"description": "SERCA calcium pump. Maps to SBML symbol `mw0ebc76ad_49d7_4845_8f88_04d443fbe7f3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"calcium-signaling"
],
"title": "Abell2011_CalciumSignaling_WithAdaptation Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model_state"
],
"from": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.state"
},
{
"to": [
"visualisation.signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model_summary"
],
"from": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model_species_labels"
],
"from": "signaling_sbml_abell2011_calciumsignaling_withadaptation_biomd0000000355_model.species_labels"
}
],
"package": "abell2011-calciumsignaling-withadaptation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageabell2011-calciumsignaling-withadaptation
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicalcium-signalingvisualisationother