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Clean Biosimulant lab for systems signaling model: Vaseghi1999_Pentose_PP_yeast. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_fructose_6_phosphate",
"label": "Initial Fructose 6 Phosphate",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.initial_fructose_6_phosphate",
"description": "Initial level of Fructose 6 Phosphate. Maps to SBML symbol `C_F6P`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_glucose_6_phosphate",
"label": "Initial Glucose 6 Phosphate",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.initial_glucose_6_phosphate",
"description": "Initial level of Glucose 6 Phosphate. Maps to SBML symbol `C_G6P`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_glyceraldehyde_3_phosphate",
"label": "Initial Glyceraldehyde 3 Phosphate",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.initial_glyceraldehyde_3_phosphate",
"description": "Initial level of Glyceraldehyde 3 Phosphate. Maps to SBML symbol `C_GAP`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "glucose_6_phosphate",
"label": "Glucose 6 Phosphate",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.glucose_6_phosphate",
"description": "Glucose 6 Phosphate. Maps to SBML symbol `C_G6P` and is emitted in native SBML units."
},
{
"name": "source_6_phosphogluconate",
"label": "6 Phosphogluconate",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.source_6_phosphogluconate",
"description": "6 Phosphogluconate. Maps to SBML symbol `C_6PG` and is emitted in native SBML units."
},
{
"name": "ribulose_5_phosphate",
"label": "Ribulose 5 Phosphate",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.ribulose_5_phosphate",
"description": "Ribulose 5 Phosphate. Maps to SBML symbol `C_Ru5P` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Vaseghi1999_Pentose_PP_yeast Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model_state"
],
"from": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model_summary"
],
"from": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model_species_labels"
],
"from": "signaling_sbml_vaseghi1999_pentose_pp_yeast_model1004070001_model.species_labels"
}
],
"package": "vaseghi1999-pentose-pp-yeast",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Vaseghi1999_Pentose_PP_yeast. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagevaseghi1999-pentose-pp-yeast
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisationother