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This model relates to figure 5 in <a href = 'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12779455'>Bhalla US, Iyengar R. It can be used to explore systemsbiology bhalla2001 mapk mkp1 oscillation model9071773985 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_mapk_slash_mkp_minus_1_minus_gene",
"label": "Initial MAPK Slash Mkp Minus 1 Minus Gene",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_mapk_slash_mkp_minus_1_minus_gene",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MKP_minus_1_minus_gene`."
},
{
"name": "initial_pla2_slash_apc",
"label": "Initial Pla2 Slash Apc",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_pla2_slash_apc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLA2_slash_APC`."
},
{
"name": "initial_model_state_dag",
"label": "Initial Model State Dag",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_model_state_dag",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `DAG`."
},
{
"name": "initial_model_state_aa",
"label": "Initial Model State Aa",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_model_state_aa",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AA`."
},
{
"name": "initial_temp_minus_pip2",
"label": "Initial Temp Minus Pip2",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_temp_minus_pip2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `temp_minus_PIP2`."
},
{
"name": "initial_mapk_slash_mapk",
"label": "Initial MAPK Slash MAPK",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.initial_mapk_slash_mapk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MAPK`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.species_labels"
},
{
"name": "mapk_slash_mkp_minus_1_minus_gene",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.mapk_slash_mkp_minus_1_minus_gene"
},
{
"name": "pla2_slash_apc",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.pla2_slash_apc"
},
{
"name": "dag",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.dag"
},
{
"name": "model_state_aa",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.model_state_aa"
},
{
"name": "temp_minus_pip2",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.temp_minus_pip2"
},
{
"name": "mapk_slash_mapk",
"maps_to": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.mapk_slash_mapk"
}
]
},
"tags": [
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bhalla2001 Mapk Mkp1 Oscillation Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model_state"
],
"from": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model_summary"
],
"from": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model_species_labels"
],
"from": "systemsbiology_sbml_bhalla2001_mapk_mkp1_oscillation_model9071773985_model.species_labels"
}
],
"package": "bhalla2001-mapk-mkp1-oscillation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model relates to figure 5 in <a href = 'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12779455'>Bhalla US, Iyengar R. It can be used to explore systemsbiology bhalla2001 mapk mkp1 oscillation model9071773985 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhalla2001-mapk-mkp1-oscillation
Created2026-05-17
Updated2026-06-13
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother