Hoefnagel2002_PyruvateBranches Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_adp",
        "units": "native SBML value",
        "default": 4.9,
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.initial_adp",
        "description": "Initial condition for adp. Maps to bundled SBML symbol `ADP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_nad",
        "units": "native SBML value",
        "default": 6.33,
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.initial_nad",
        "description": "Initial condition for nad. Maps to bundled SBML symbol `NAD`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 0.1,
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_nadh",
        "units": "native SBML value",
        "default": 3.67,
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.initial_nadh",
        "description": "Initial condition for nadh. Maps to bundled SBML symbol `NADH`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_5",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.initial_metabolic_pathway_state_5",
        "description": "Initial condition for metabolic pathway state 5. Maps to bundled SBML symbol `pyruvate`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "adp",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.adp"
      },
      {
        "name": "nad",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.nad"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.atp"
      },
      {
        "name": "nadh",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.nadh"
      },
      {
        "name": "metabolic_pathway_state_5",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.metabolic_pathway_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.observable_labels"
      }
    ]
  },
  "title": "Hoefnagel2002_PyruvateBranches Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model",
      "parameters": {
        "model_path": "data/BIOMD0000000017.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model_observable_values"
      ],
      "from": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model_run_summary"
      ],
      "from": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model_observable_labels"
      ],
      "from": "metabolism_sbml_hoefnagel2002_pyruvatebranches_biomd0000000017_model.observable_labels"
    }
  ],
  "package": "hoefnagel2002-pyruvatebranches",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "This a model from the article: Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}