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Source-faithful physiology lab for Clancy, Rudy, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_xs1",
"label": "Initial Xs1",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.initial_xs1",
"description": "Initial value for Xs1. Maps to source symbol `xs1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.variable_labels"
},
{
"name": "sodium_current_i_ns_na",
"label": "Sodium Current I Ns Na",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.sodium_current_i_ns_na",
"description": "Sodium Current I Ns Na. Maps to source symbol `I_ns_Na`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "potassium_current_i_ns_k",
"label": "Potassium Current I Ns K",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.potassium_current_i_ns_k",
"description": "Potassium Current I Ns K. Maps to source symbol `I_ns_K`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "kd_kna",
"label": "Kd Kna",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.kd_kna",
"description": "Kd Kna. Maps to source symbol `kdKNa`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "pona",
"label": "Pona",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.pona",
"description": "Pona. Maps to source symbol `pona`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "pov",
"label": "Pov",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.pov",
"description": "Pov. Maps to source symbol `pov`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_conductance",
"label": "Sodium Conductance",
"maps_to": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.sodium_conductance",
"description": "Sodium Conductance. Maps to source symbol `g_K_Na`. Units: milliS_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Clancy2001 - Cellular Consequences Herg Mutations Long Qt Syndrome Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model",
"parameters": {
"model_path": "data/clancy_rudy_2001.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_state"
],
"from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.state"
},
{
"to": [
"visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_summary"
],
"from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_trajectory"
],
"from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_clancy_rudy_2001_clancyrudy2001_model_variable_labels"
],
"from": "physiology_cellml_clancy_rudy_2001_clancyrudy2001_model.variable_labels"
}
],
"package": "clancy2001-cellular-consequences-herg-mutations-long-qt-syndrome",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Clancy, Rudy, 2001. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageclancy2001-cellular-consequences-herg-mutations-long-qt-syndrome
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother