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Source-faithful physiology lab for Nowak, Bangham, 1996. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_viral_quantity_v",
"label": "Initial Viral Quantity V (source v)",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.initial_viral_quantity_v",
"description": "Initial value for Viral Quantity V (source v). Maps to source symbol `v`. Units: dimensionless. Naming evidence: viral/infection context supports a conservative viral quantity label.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_infected_y",
"label": "Initial Infected Y",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.initial_infected_y",
"description": "Initial value for Infected Y. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.variable_labels"
},
{
"name": "viral_quantity_v",
"label": "Viral Quantity V (source v)",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.viral_quantity_v",
"description": "Viral Quantity V (source v). Maps to source symbol `v`. Units: dimensionless. Naming evidence: viral/infection context supports a conservative viral quantity label."
},
{
"name": "virus_k",
"label": "Virus K",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.virus_k",
"description": "Virus K. Maps to source symbol `k`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "virus_u",
"label": "Virus U",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.virus_u",
"description": "Virus U. Maps to source symbol `u`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "infected_y",
"label": "Infected Y",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.infected_y",
"description": "Infected Y. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "uninfected_x",
"label": "Uninfected X",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.uninfected_x",
"description": "Uninfected X. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Nowak1996 - Population Dynamics Immune Responses Persistent Viruses 1 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model",
"parameters": {
"model_path": "data/nowak_bangham_1996.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_nowak_bangham_1996_nowakbangham1996_model_state"
],
"from": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.state"
},
{
"to": [
"visualisation.physiology_cellml_nowak_bangham_1996_nowakbangham1996_model_summary"
],
"from": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_nowak_bangham_1996_nowakbangham1996_model_trajectory"
],
"from": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_nowak_bangham_1996_nowakbangham1996_model_variable_labels"
],
"from": "physiology_cellml_nowak_bangham_1996_nowakbangham1996_model.variable_labels"
}
],
"package": "nowak1996-population-dynamics-immune-responses-persiste-a7bc81df",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Nowak, Bangham, 1996. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagenowak1996-population-dynamics-immune-responses-persiste-a7bc81df
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother