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This is a four dimensionsal ordinary differential equation mathematical model that explores the contribution of PI3P during Mycobacterium tuberculosis (Mtb) phagocytosis. It can be used to explore systemsbiology gupta2019 restoration of cytosolic calcium dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_ci",
"label": "Initial Model State Ci",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_ci",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ci`."
},
{
"name": "initial_model_state_ce",
"label": "Initial Model State Ce",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_ce",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ce`."
},
{
"name": "initial_model_state_k",
"label": "Initial Model State K",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_k",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `K`."
},
{
"name": "initial_model_state_p",
"label": "Initial Model State P",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.initial_model_state_p",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.species_labels"
},
{
"name": "model_state_ci",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_ci"
},
{
"name": "model_state_ce",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_ce"
},
{
"name": "model_state_k",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_k"
},
{
"name": "model_state_p",
"maps_to": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.model_state_p"
}
]
},
"tags": [
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Gupta2019 Restoration Of Cytosolic Calcium Inhibits Mycobacterium Tu Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model_state"
],
"from": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model_summary"
],
"from": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model_species_labels"
],
"from": "systemsbiology_sbml_gupta2019_restoration_of_cytosolic_calcium_inhib_model1911120004_model.species_labels"
}
],
"package": "gupta2019-restoration-of-cytosolic-calcium-inhibits-myc-77217169",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is a four dimensionsal ordinary differential equation mathematical model that explores the contribution of PI3P during Mycobacterium tuberculosis (Mtb) phagocytosis. It can be used to explore systemsbiology gupta2019 restoration of cytosolic calcium dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegupta2019-restoration-of-cytosolic-calcium-inhibits-myc-77217169
Created2026-05-17
Updated2026-06-13
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother