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Clean Biosimulant lab for circadian regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_abar_m",
"label": "Initial C ABAR M",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.initial_c_abar_m",
"description": "Initial level of C ABAR M. Maps to SBML symbol `species_1`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "c_abar_m",
"label": "C ABAR M",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.c_abar_m",
"description": "C ABAR M. Maps to SBML symbol `species_1` and is emitted in native SBML units."
},
{
"name": "c_pp2c",
"label": "C PP2C",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.c_pp2c",
"description": "C PP2C. Maps to SBML symbol `species_2` and is emitted in native SBML units."
},
{
"name": "c_sn_rk2",
"label": "C Sn RK2",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.c_sn_rk2",
"description": "C Sn RK2. Maps to SBML symbol `species_3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"circadian",
"plant-signaling"
],
"title": "Pokhilko2013 - TOC1 signalling in Arabidopsis circadian clock Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model_state"
],
"from": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.state"
},
{
"to": [
"visualisation.signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model_summary"
],
"from": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model_species_labels"
],
"from": "signaling_sbml_pokhilko2013_toc1_signalling_in_arabidopsis_circ_biomd0000000445_model.species_labels"
}
],
"package": "pokhilko2013-toc1-signalling-in-arabidopsis-circ",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for circadian regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepokhilko2013-toc1-signalling-in-arabidopsis-circ
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicircadianplant-signalingvisualisationother