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Haffez2017 - RAR interaction with syntheticanalogues This model is described in the article: The molecular basis of the interactions between synthetic retinoic acid analogues and the retinoic acid rec. It can be used to explore systemsbiology haffez2017 rar interaction with synthetic dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_co_activator",
"label": "Initial Co Activator",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.initial_co_activator",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CA`."
},
{
"name": "initial_ligand_receptor_co_activator",
"label": "Initial Ligand Receptor Co Activator",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.initial_ligand_receptor_co_activator",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LRCA`."
},
{
"name": "initial_ligand_receptor",
"label": "Initial Ligand Receptor",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.initial_ligand_receptor",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LR`."
},
{
"name": "initial_receptor",
"label": "Initial Receptor",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.initial_receptor",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `R`."
},
{
"name": "initial_ligand",
"label": "Initial Ligand",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.initial_ligand",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `L`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.species_labels"
},
{
"name": "co_activator",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.co_activator"
},
{
"name": "ligand_receptor_co_activator",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.ligand_receptor_co_activator"
},
{
"name": "ligand_receptor",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.ligand_receptor"
},
{
"name": "receptor",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.receptor"
},
{
"name": "ligand",
"maps_to": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.ligand"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Haffez2017 Rar Interaction With Synthetic Analogues Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model_state"
],
"from": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model_summary"
],
"from": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model_species_labels"
],
"from": "systemsbiology_sbml_haffez2017_rar_interaction_with_synthetic_analog_biomd0000000629_model.species_labels"
}
],
"package": "haffez2017-rar-interaction-with-synthetic-analogues",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Haffez2017 - RAR interaction with syntheticanalogues This model is described in the article: The molecular basis of the interactions between synthetic retinoic acid analogues and the retinoic acid rec. It can be used to explore systemsbiology haffez2017 rar interaction with synthetic dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehaffez2017-rar-interaction-with-synthetic-analogues
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother