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Clean Biosimulant lab for systems signaling model: Chan2004_TCell_receptor_activation. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_inactive_lck",
"label": "Initial Inactive Lck",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.initial_inactive_lck",
"description": "Initial level of Inactive Lck. Maps to SBML symbol `lck_inactive`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "inactive_lck",
"label": "Inactive Lck",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.inactive_lck",
"description": "Inactive Lck. Maps to SBML symbol `lck_inactive` and is emitted in native SBML units."
},
{
"name": "active_lck",
"label": "active Lck",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.active_lck",
"description": "active Lck. Maps to SBML symbol `lck_active` and is emitted in native SBML units."
},
{
"name": "inactive_phosphatase",
"label": "Inactive Phosphatase",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.inactive_phosphatase",
"description": "Inactive Phosphatase. Maps to SBML symbol `phosphatase_inactive` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr"
],
"title": "Chan2004_TCell_receptor_activation Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model_state"
],
"from": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.state"
},
{
"to": [
"visualisation.signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model_summary"
],
"from": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model_species_labels"
],
"from": "signaling_sbml_chan2004_tcell_receptor_activation_biomd0000000120_model.species_labels"
}
],
"package": "chan2004-tcell-receptor-activation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Chan2004_TCell_receptor_activation. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagechan2004-tcell-receptor-activation
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisationother