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Clean Biosimulant lab for systems signaling model: Vernoux2011_AuxinSignaling_AuxinSingleStepInput. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_auxin",
"label": "Initial Auxin",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.initial_auxin",
"description": "Initial level of Auxin. Maps to SBML symbol `aux`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "aux_indole_3_acetic_acid",
"label": "Aux indole-3-acetic acid",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.aux_indole_3_acetic_acid",
"description": "Aux indole-3-acetic acid. Maps to SBML symbol `I` and is emitted in native SBML units."
},
{
"name": "auxin_response_factor",
"label": "auxin response factor",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.auxin_response_factor",
"description": "auxin response factor. Maps to SBML symbol `A` and is emitted in native SBML units."
},
{
"name": "aux_indole_3_acetic_acid_aux_indole_3_acetic_acid",
"label": "Aux indole-3-acetic acid Aux indole-3-acetic acid",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.aux_indole_3_acetic_acid_aux_indole_3_acetic_acid",
"description": "Aux indole-3-acetic acid Aux indole-3-acetic acid. Maps to SBML symbol `D_II` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"plant-signaling"
],
"title": "Vernoux2011_AuxinSignaling_AuxinSingleStepInput Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model_state"
],
"from": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.state"
},
{
"to": [
"visualisation.signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model_summary"
],
"from": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model_species_labels"
],
"from": "signaling_sbml_vernoux2011_auxinsignaling_auxinsinglestepinput_biomd0000000351_model.species_labels"
}
],
"package": "vernoux2011-auxinsignaling-auxinsinglestepinput",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Vernoux2011_AuxinSignaling_AuxinSingleStepInput. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagevernoux2011-auxinsignaling-auxinsinglestepinput
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiplant-signalingvisualisationother