Novak2001 - Mathematical Cell Division Cycle Fission Yeast Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cell_cycle_state_m",
        "label": "Initial Cell Cycle State M (source M)",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.initial_cell_cycle_state_m",
        "description": "Initial value for Cell Cycle State M (source M). Maps to source symbol `M`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cdc13_t",
        "label": "Initial Cdc13 T",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.initial_cdc13_t",
        "description": "Initial value for Cdc13 T. Maps to source symbol `Cdc13T`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.variable_labels"
      },
      {
        "name": "cell_cycle_state_m",
        "label": "Cell Cycle State M (source M)",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.cell_cycle_state_m",
        "description": "Cell Cycle State M (source M). Maps to source symbol `M`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
      },
      {
        "name": "cdc13_t",
        "label": "Cdc13 T",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.cdc13_t",
        "description": "Cdc13 T. Maps to source symbol `Cdc13T`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "iep",
        "label": "Iep",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.iep",
        "description": "Iep. Maps to source symbol `IEP`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "pre_mpf",
        "label": "Pre Mpf",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.pre_mpf",
        "description": "Pre Mpf. Maps to source symbol `preMPF`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rum1_t",
        "label": "Rum1 T",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.rum1_t",
        "description": "Rum1 T. Maps to source symbol `Rum1T`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "start_kinase_state_sk",
        "label": "Start Kinase State Sk (source SK)",
        "maps_to": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.start_kinase_state_sk",
        "description": "Start Kinase State Sk (source SK). Maps to source symbol `SK`. Units: dimensionless. Naming evidence: cell-cycle or mitotic context supports a conservative source-state label."
      }
    ]
  },
  "title": "Novak2001 - Mathematical Cell Division Cycle Fission Yeast Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model",
      "parameters": {
        "model_path": "data/novak_pataki_ciliberto_tyson_2001.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model_state"
      ],
      "from": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model_summary"
      ],
      "from": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model_trajectory"
      ],
      "from": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model_variable_labels"
      ],
      "from": "physiology_cellml_novak_pataki_ciliberto_tyson_2001_novakpatakicilibertotyson2001_model.variable_labels"
    }
  ],
  "package": "novak2001-mathematical-cell-division-cycle-fission-yeast",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Novak, Pataki, Ciliberto, Tyson, 2001. Public controls and outputs are mapped to real source symbols for signalling physiology.",
  "schema_version": "2.0"
}