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Single-model lab wrapper for Aguda1999 - G2 DNA damage checkpoint. Baltazar D. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "cdc25_active_total",
"label": "Cdc25 Active Total",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25_active_total",
"description": "Controls Cdc25 Active Total in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25_active_total`."
}
],
"outputs": [
{
"name": "cdc25_active",
"label": "Cdc25 Active",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25_active",
"description": "Tracks Cdc25 Active in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25_active`."
},
{
"name": "cdc25ps216_active",
"label": "Cdc25Ps216 Active",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25ps216_active",
"description": "Tracks Cdc25Ps216 Active in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25ps216_active`."
},
{
"name": "cdc25_inactive",
"label": "Cdc25 Inactive",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25_inactive",
"description": "Tracks Cdc25 Inactive in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25_inactive`."
},
{
"name": "cdc25ps216_inactive",
"label": "Cdc25Ps216 Inactive",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25ps216_inactive",
"description": "Tracks Cdc25Ps216 Inactive in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25ps216_inactive`."
},
{
"name": "phosphorylated_chk1",
"label": "Phosphorylated Chk1",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.phosphorylated_chk1",
"description": "Tracks Phosphorylated Chk1 in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.phosphorylated_chk1`."
},
{
"name": "protein_14_3_3",
"label": "Protein 14-3-3",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.protein_14_3_3",
"description": "Tracks Protein 14-3-3 in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.protein_14_3_3`."
},
{
"name": "cdc25ps216_14_3_3_inactive",
"label": "Cdc25Ps216 14-3-3 Inactive",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25ps216_14_3_3_inactive",
"description": "Tracks Cdc25Ps216 14-3-3 Inactive in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.cdc25ps216_14_3_3_inactive`."
},
{
"name": "p53_tumor_suppressor",
"label": "p53 tumor suppressor",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.p53_tumor_suppressor",
"description": "Tracks p53 tumor suppressor in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.p53_tumor_suppressor`."
},
{
"name": "p21",
"label": "P21",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.p21",
"description": "Tracks P21 in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.p21`."
},
{
"name": "maturation_promoting_factor",
"label": "Maturation-promoting factor",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.maturation_promoting_factor",
"description": "Tracks Maturation-promoting factor in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.maturation_promoting_factor`."
},
{
"name": "p21_mpf",
"label": "P21 MPF",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.p21_mpf",
"description": "Tracks P21 MPF in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.p21_mpf`."
},
{
"name": "pre_mpf",
"label": "Pre MPF",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.pre_mpf",
"description": "Tracks Pre MPF in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.pre_mpf`."
},
{
"name": "wee1_inhibitory_kinase",
"label": "Wee1 inhibitory kinase",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.wee1_inhibitory_kinase",
"description": "Tracks Wee1 inhibitory kinase in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.wee1_inhibitory_kinase`."
},
{
"name": "chk1_checkpoint_kinase",
"label": "Chk1 checkpoint kinase",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.chk1_checkpoint_kinase",
"description": "Tracks Chk1 checkpoint kinase in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.chk1_checkpoint_kinase`."
},
{
"name": "rad3_atm",
"label": "Rad3 ATM",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.rad3_atm",
"description": "Tracks Rad3 ATM in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.rad3_atm`."
},
{
"name": "wee1_phosphorylated",
"label": "Wee1 Phosphorylated",
"maps_to": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.wee1_phosphorylated",
"description": "Tracks Wee1 Phosphorylated in the lab model via `cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.wee1_phosphorylated`."
}
]
},
"title": "Aguda1999 - G2 DNA Damage Checkpoint (Cellcycle) Lab",
"models": [
{
"path": "models/core",
"alias": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model_state"
],
"from": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.state"
},
{
"to": [
"visualisation.cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model_summary"
],
"from": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.summary"
},
{
"to": [
"visualisation.cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model_species_labels"
],
"from": "cellcycle_sbml_aguda1999_g2_dna_damage_checkpoint_biomd0000000704_model.species_labels"
}
],
"package": "aguda1999-g2-dna-damage-checkpoint-models-cellcycle",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.3",
"description": "Single-model lab wrapper for Aguda1999 - G2 DNA damage checkpoint. Baltazar D. It can be used to explore cell-cycle regulation dynamics and compare checkpoint behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageaguda1999-g2-dna-damage-checkpoint-models-cellcycle
Created2026-06-13
Updated2026-06-13
cellcyclesbmlbiomodels_ebifaithfulvisualisationother